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  5. Cba_g03340

Cba_g03340


Description : subfamily ABCG transporter & original description: none


Gene families : OG0000888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000888_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g03340
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00181450 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
AMTR_s00031p00236610 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
AMTR_s00060p00208620 evm_27.TU.AmTr_v1... External stimuli response.biotic... 0.02 OrthoFinder output from all 47 species
AMTR_s00063p00178530 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
AT1G53270 No alias ABC-2 type transporter family protein 0.02 OrthoFinder output from all 47 species
AT2G13610 No alias ABC-2 type transporter family protein 0.03 OrthoFinder output from all 47 species
AT2G39350 No alias ABC-2 type transporter family protein 0.03 OrthoFinder output from all 47 species
AT3G55100 No alias ABC-2 type transporter family protein 0.03 OrthoFinder output from all 47 species
AT3G55110 No alias ABC-2 type transporter family protein 0.06 OrthoFinder output from all 47 species
AT4G25750 No alias ABC-2 type transporter family protein 0.02 OrthoFinder output from all 47 species
AT5G19410 No alias ABC-2 type transporter family protein 0.05 OrthoFinder output from all 47 species
AT5G52860 No alias ABC-2 type transporter family protein 0.02 OrthoFinder output from all 47 species
Ala_g23786 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14907 No alias subfamily ABCG transporter & original description: none 0.11 OrthoFinder output from all 47 species
Aop_g37274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05499.t1 Aspi01Gene05499 subfamily ABCG transporter & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene07578.t1 Aspi01Gene07578 subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0120.g046757 No alias subfamily ABCG transporter & original description: CDS=1-2250 0.04 OrthoFinder output from all 47 species
Cba_g06245 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g07276 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g08003 No alias subfamily ABCG transporter & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g23513 No alias subfamily ABCG transporter & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g04073 No alias subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g10068 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06955 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014222001 No alias ABC transporter G family member 10 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01022346001 No alias ABC transporter G family member 5 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01028809001 No alias Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
GSVIVT01037274001 No alias Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
LOC_Os01g42900.1 LOC_Os01g42900 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
LOC_Os03g17350.1 LOC_Os03g17350 subfamily ABCG transporter 0.04 OrthoFinder output from all 47 species
LOC_Os05g31910.2 LOC_Os05g31910 subfamily ABCG transporter 0.01 OrthoFinder output from all 47 species
Len_g50392 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g39649 No alias subfamily ABCG transporter & original description: none 0.05 OrthoFinder output from all 47 species
MA_10426701g0030 No alias subfamily ABCG transporter 0.04 OrthoFinder output from all 47 species
Mp1g25240.1 No alias subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Mp2g07990.1 No alias subfamily ABCG transporter 0.04 OrthoFinder output from all 47 species
Mp5g04860.1 No alias subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Mp5g05620.1 No alias subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Msp_g13417 No alias subfamily ABCG transporter & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g11905 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g37386 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c9_18880V3.1 Pp3c9_18880 ABC-2 type transporter family protein 0.01 OrthoFinder output from all 47 species
Ppi_g31857 No alias subfamily ABCG transporter & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006110 No alias subfamily ABCG transporter & original description: CDS=1-2232 0.05 OrthoFinder output from all 47 species
Solyc03g113690.1.1 Solyc03g113690 subfamily ABCG transporter 0.05 OrthoFinder output from all 47 species
Solyc04g010200.1.1 Solyc04g010200 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Solyc07g053300.1.1 Solyc07g053300 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Spa_g10980 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29782 No alias subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e001269_P001 Zm00001e001269 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Zm00001e020697_P001 Zm00001e020697 subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Zm00001e031556_P001 Zm00001e031556 subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Zm00001e036158_P002 Zm00001e036158 subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Zm00001e042020_P001 Zm00001e042020 ABC transporter G family member 5 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016744 transketolase or transaldolase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 132 284
IPR013525 ABC_2_trans 446 655
No external refs found!