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  5. Cba_g03409

Cba_g03409


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g03409

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00172690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
Adi_g079818 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07360 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16835 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35872 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g35880 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03878 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14639 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g32336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54955 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g58336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06037 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27296 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g28220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36880 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g41844 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19862 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33557 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g03349 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.23G075300.1 Ceric.23G075300 not classified & original description: pacid=50609898... 0.02 OrthoFinder output from all 47 species
Ceric.27G011400.1 Ceric.27G011400 not classified & original description: pacid=50605728... 0.03 OrthoFinder output from all 47 species
Dcu_g07762 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g26239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47943 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g04950 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g74600.1 CRR22, LOC_Os01g74600 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g44210.2 LOC_Os03g44210 RNA editing factor (SEL1/PDM1) 0.03 OrthoFinder output from all 47 species
LOC_Os04g51350.1 LOC_Os04g51350 RNA editing factor (AEF1) 0.03 OrthoFinder output from all 47 species
Len_g18787 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03483 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06695 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07379 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07641 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g24085 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_100287g0010 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
MA_18383g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
MA_36655g0010 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.05 OrthoFinder output from all 47 species
MA_6527g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Nbi_g13575 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16471 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g07049 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g02795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23084 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005911 EMB2758 not classified & original description: CDS=1-2163 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006801 EMB2261 not classified & original description: CDS=90-2282 0.02 OrthoFinder output from all 47 species
Sam_g18667 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09530 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10269 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002552_P001 Zm00001e002552 RNA editing factor (SEL1/PDM1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 808 832
IPR002885 Pentatricopeptide_repeat 128 176
IPR002885 Pentatricopeptide_repeat 531 579
IPR002885 Pentatricopeptide_repeat 633 681
IPR002885 Pentatricopeptide_repeat 431 478
IPR002885 Pentatricopeptide_repeat 329 377
IPR002885 Pentatricopeptide_repeat 228 276
IPR002885 Pentatricopeptide_repeat 734 780
No external refs found!