Cba_g03800


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g03800

Target Alias Description ECC score Gene Family Method Actions
Adi_g002304 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g015735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g098989 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g101336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g11535 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g17889 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g25067 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g29185 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g32783 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g34817 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42628 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03485 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03812 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g03840 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04222 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06403 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g06645 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g06724 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g06803 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g06833 REME1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g06928 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06948 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g07040 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07140 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07375 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07500 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g10468 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g18037 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g18476 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g18621 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18934 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19283 CRR2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19798 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g22699 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g22752 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26262 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g26324 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g28530 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30088 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30417 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g30426 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g30595 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30697 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g30723 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g30730 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g30736 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Als_g30853 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g39618 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g47378 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g54704 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g55222 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g58106 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g59722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g60956 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g61738 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62639 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g16331 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16519 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g21617 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23933 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33113 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g38090 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g67869 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g69999 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g70449 DOT4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene00921.t1 CRR2, Aspi01Gene00921 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02798.t1 Aspi01Gene02798 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05393.t1 Aspi01Gene05393 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene10264.t1 Aspi01Gene10264 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene25991.t1 CRR22, Aspi01Gene25991 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30841.t1 OTP82, Aspi01Gene30841 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34811.t1 Aspi01Gene34811 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene38554.t1 VAC1, ECB2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene52031.t2 Aspi01Gene52031 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g04039 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g05567 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g06233 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g06583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07472 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20419 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g20659 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20832 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g21419 EMB2744 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g29934 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g33383 CRR22 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g67463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67843 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g68679 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g76750 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g78717 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.02G058500.1 Ceric.02G058500 not classified & original description: pacid=50584148... 0.04 OrthoFinder output from all 47 species
Ceric.02G071400.1 Ceric.02G071400 not classified & original description: pacid=50584970... 0.05 OrthoFinder output from all 47 species
Ceric.03G039400.1 Ceric.03G039400 not classified & original description: pacid=50571919... 0.06 OrthoFinder output from all 47 species
Ceric.09G024000.1 EMB2261, Ceric.09G024000 not classified & original description: pacid=50587738... 0.04 OrthoFinder output from all 47 species
Dac_g13728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30402 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g07608 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08575 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g18210 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g19445 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g22981 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g29816 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g40971 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g45843 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g51448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12147 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01030836001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_36839 OTP84 Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
LOC_Os01g10090.1 LOC_Os01g10090 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os02g01610.1 LOC_Os02g01610 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os02g44480.1 LOC_Os02g44480 Pentatricopeptide repeat-containing protein At5g39350... 0.05 OrthoFinder output from all 47 species
LOC_Os04g43430.2 LOC_Os04g43430 RNA editing factor (MEF12) 0.03 OrthoFinder output from all 47 species
LOC_Os06g47920.1 LOC_Os06g47920 Pentatricopeptide repeat-containing protein At5g44230... 0.02 OrthoFinder output from all 47 species
Len_g05423 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54668 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g04822 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07089 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_121102g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Msp_g23085 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g34234 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g25933 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g22409 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g24821 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27204 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g28389 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23074 LPA66 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g12723 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo107700 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Smo76411 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Smo77426 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Solyc02g065410.3.1 CRR22, Solyc02g065410 Pentatricopeptide repeat-containing protein At1g20230... 0.05 OrthoFinder output from all 47 species
Solyc03g063690.1.1 MEF1, Solyc03g063690 RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
Solyc09g009950.4.1 Solyc09g009950 RNA editing factor (MEF10) 0.02 OrthoFinder output from all 47 species
Solyc11g040060.3.1 EMB2758, Solyc11g040060 Pentatricopeptide repeat-containing protein At4g33990... 0.04 OrthoFinder output from all 47 species
Spa_g14568 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20297 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04965 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06477 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g14007 MEF1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g19120 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30438 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g35068 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e000621_P001 CRR22, Zm00001e000621 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Zm00001e008200_P001 Zm00001e008200 Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Zm00001e020567_P001 Zm00001e020567 RNA editing factor (MEF7) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 199 222
IPR002885 Pentatricopeptide_repeat 97 118
IPR002885 Pentatricopeptide_repeat 21 70
IPR002885 Pentatricopeptide_repeat 123 170
IPR046848 E_motif 240 302
No external refs found!