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  5. Cba_g04257

Cba_g04257


Description : not classified & original description: none


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g04257

Target Alias Description ECC score Gene Family Method Actions
Ala_g02597 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g37436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38553 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12282 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g64809 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene27639.t2 Aspi01Gene27639 RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Aspi01Gene46881.t1 ESP3, EMB2733,... RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene64069.t1 EMB3011, Aspi01Gene64069 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene64070.t1 EMB3011, Aspi01Gene64070 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G075900.1 EMB3011, Ceric.21G075900 RNA helicase *(Prp16) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000796.23 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Dac_g44524 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g03121 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.09 OrthoFinder output from all 47 species
Dde_g05654 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g01369 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g13066 EMB3011 RNA helicase *(Prp16) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g29092 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g35794 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10217744g0010 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.04 OrthoFinder output from all 47 species
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Mp4g02780.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Msp_g14081 EMB3011 RNA helicase *(Prp16) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c11_22160V3.1 Pp3c11_22160 ATP-dependent RNA helicase, putative 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012085 No alias not classified & original description: CDS=161-2176 0.02 OrthoFinder output from all 47 species
Sam_g48742 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Solyc09g097820.3.1 Solyc09g097820 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 104 161
No external refs found!