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  5. Cba_g04675

Cba_g04675


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g04675

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00172690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
AT3G22150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g101214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g106007 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g111634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07360 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16835 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g32458 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35872 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35880 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03179 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g03840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04425 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04818 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05107 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05916 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06012 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06035 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06199 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g06261 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06396 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06397 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06398 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g06415 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06689 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06742 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07067 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07235 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07262 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07370 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07375 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07386 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15385 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g16091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16416 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18506 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g18621 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18704 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18939 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19247 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21031 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g26781 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30196 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30417 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30425 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30627 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30899 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32003 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g39900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54704 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g55080 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g55222 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g58336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61738 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g06037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08870 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19862 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21473 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33557 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g38925 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g43685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68110 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05254 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29979 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G078100.1 OTP84, Ceric.07G078100 not classified & original description: pacid=50626860... 0.04 OrthoFinder output from all 47 species
Ceric.07G098300.1 CRR22, Ceric.07G098300 not classified & original description: pacid=50626946... 0.04 OrthoFinder output from all 47 species
Ceric.27G011400.1 Ceric.27G011400 not classified & original description: pacid=50605728... 0.03 OrthoFinder output from all 47 species
Ceric.33G061000.1 OTP84, Ceric.33G061000 not classified & original description: pacid=50606666... 0.04 OrthoFinder output from all 47 species
Dac_g03810 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g05109 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07762 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g21452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g44713 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47943 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03935 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05848 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g11227 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g12171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19140 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22352 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23534 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26478 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28701 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g35440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g41188 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46394 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g49915 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g49993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000034001 MEF19 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os03g44210.2 LOC_Os03g44210 RNA editing factor (SEL1/PDM1) 0.03 OrthoFinder output from all 47 species
LOC_Os04g51350.1 LOC_Os04g51350 RNA editing factor (AEF1) 0.03 OrthoFinder output from all 47 species
Len_g18278 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g21008 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g24653 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g24736 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26549 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g14702 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_6527g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Msp_g14157 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g13575 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16471 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g24038 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26958 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13586 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g64857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05869 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012842 CRR2 not classified & original description: CDS=114-1901 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015571 No alias not classified & original description: CDS=1-1581 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019840 No alias not classified & original description: CDS=144-2663 0.04 OrthoFinder output from all 47 species
Sam_g18667 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g02642 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g08436 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g12511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14318 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23616 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06093 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e002552_P001 Zm00001e002552 RNA editing factor (SEL1/PDM1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 378 424
IPR002885 Pentatricopeptide_repeat 179 225
IPR002885 Pentatricopeptide_repeat 276 323
IPR002885 Pentatricopeptide_repeat 153 173
IPR002885 Pentatricopeptide_repeat 80 110
IPR002885 Pentatricopeptide_repeat 352 373
IPR002885 Pentatricopeptide_repeat 452 477
IPR046848 E_motif 496 558
No external refs found!