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  5. Cba_g04690

Cba_g04690


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g04690

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00191560 OTP82,... Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.03 OrthoFinder output from all 47 species
AT3G05340 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G13880 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G20010 PTAC9, OSB2 plastid transcriptionally active 9 0.03 OrthoFinder output from all 47 species
Als_g05105 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06558 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07490 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g15743 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18512 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26537 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g30196 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g31795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47378 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g59722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09402 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g32957 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13134 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16765 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20195 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23786 MEF19 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23995 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g26042 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g29708 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33229 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene12659.t1 Aspi01Gene12659 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36977.t1 Aspi01Gene36977 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene50511.t1 Aspi01Gene50511 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene54730.t1 Aspi01Gene54730 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000396 No alias not classified & original description: CDS=1-2745 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000662 No alias not classified & original description: CDS=1-2844 0.02 OrthoFinder output from all 47 species
Azfi_s0008.g011478 No alias not classified & original description: CDS=1-2919 0.02 OrthoFinder output from all 47 species
Azfi_s0028.g023878 No alias not classified & original description: CDS=1-2883 0.03 OrthoFinder output from all 47 species
Azfi_s0050.g030992 No alias not classified & original description: CDS=1-2877 0.02 OrthoFinder output from all 47 species
Azfi_s0094.g043395 No alias not classified & original description: CDS=1-2703 0.02 OrthoFinder output from all 47 species
Azfi_s0117.g046569 No alias not classified & original description: CDS=1-2520 0.04 OrthoFinder output from all 47 species
Azfi_s0130.g049076 No alias not classified & original description: CDS=1-1890 0.03 OrthoFinder output from all 47 species
Azfi_s0164.g054282 No alias not classified & original description: CDS=1-4443 0.03 OrthoFinder output from all 47 species
Azfi_s0175.g055975 No alias not classified & original description: CDS=1-4965 0.03 OrthoFinder output from all 47 species
Azfi_s0262.g060819 REME1 not classified & original description: CDS=1-1380 0.02 OrthoFinder output from all 47 species
Azfi_s0282.g063034 No alias not classified & original description: CDS=389-4795 0.04 OrthoFinder output from all 47 species
Azfi_s0380.g067373 No alias not classified & original description: CDS=1-3669 0.02 OrthoFinder output from all 47 species
Azfi_s0470.g072895 No alias not classified & original description: CDS=1-1518 0.04 OrthoFinder output from all 47 species
Azfi_s1704.g105987 No alias not classified & original description: CDS=1-2742 0.02 OrthoFinder output from all 47 species
Cba_g34537 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G074600.1 Ceric.06G074600 not classified & original description: pacid=50619733... 0.04 OrthoFinder output from all 47 species
Ceric.28G027300.1 CRR22, Ceric.28G027300 not classified & original description: pacid=50569783... 0.04 OrthoFinder output from all 47 species
Dac_g05753 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06287 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07716 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06677 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g17089 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g19684 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23363 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g28160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20660 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20812 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g29034 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035491001 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
GSVIVT01038381001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
LOC_Os01g10090.1 LOC_Os01g10090 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g03910 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05370 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05426 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18873 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18932 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g24813 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g26306 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05478 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_597g0020 DOT4 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_77675g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_794605g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Msp_g15459 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g19838 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43791 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g14721 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g57713 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g57968 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63828 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63843 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g19854 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08487 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g13834 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18809 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g53545 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61335 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007447 No alias not classified & original description: CDS=108-3026 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008668 No alias not classified & original description: CDS=1-2001 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012420 No alias not classified & original description: CDS=519-2384 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0193.g025370 No alias not classified & original description: CDS=1-2208 0.03 OrthoFinder output from all 47 species
Sam_g12009 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17751 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18597 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24777 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36269 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g40244 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40571 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo134463 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Spa_g06014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g20286 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53369 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56147 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10679 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g14539 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g17410 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17860 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26902 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g28558 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g29524 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44634 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e031693_P001 Zm00001e031693 Pentatricopeptide repeat-containing protein At4g14050,... 0.03 OrthoFinder output from all 47 species
Zm00001e039305_P001 Zm00001e039305 RNA editing factor (MEF13) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 876 924
IPR002885 Pentatricopeptide_repeat 253 302
IPR002885 Pentatricopeptide_repeat 658 704
IPR002885 Pentatricopeptide_repeat 556 603
IPR002885 Pentatricopeptide_repeat 153 200
IPR002885 Pentatricopeptide_repeat 456 502
IPR002885 Pentatricopeptide_repeat 758 805
IPR002885 Pentatricopeptide_repeat 354 401
IPR002885 Pentatricopeptide_repeat 61 99
IPR002885 Pentatricopeptide_repeat 834 857
IPR002885 Pentatricopeptide_repeat 530 553
IPR002885 Pentatricopeptide_repeat 127 152
IPR002885 Pentatricopeptide_repeat 632 656
No external refs found!