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  5. Cba_g04821

Cba_g04821


Description : RNA chaperone *(RZ1) & original description: none


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g04821

Target Alias Description ECC score Gene Family Method Actions
AT3G46020 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Adi_g006715 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g013124 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g016827 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g021389 GR-RBP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g029474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g050015 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g056269 ATRZ-1A not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g081479 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g082209 GR-RBP5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06710 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05447 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05819 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01618 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07993 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g24232 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g32091 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g44798 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00926 GR-RBP3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g29184 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009723 No alias RNA chaperone *(RZ1) & original description: CDS=187-939 0.04 OrthoFinder output from all 47 species
Azfi_s0136.g050935 GRP2, ATGRP2, GR-RBP2 not classified & original description: CDS=1-543 0.04 OrthoFinder output from all 47 species
Azfi_s0232.g059291 GRP2, ATGRP2, GR-RBP2 not classified & original description: CDS=1-585 0.03 OrthoFinder output from all 47 species
Azfi_s0468.g072856 GR-RBP4, GRP4 not classified & original description: CDS=1-582 0.04 OrthoFinder output from all 47 species
Cba_g55211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G002500.1 Ceric.09G002500 RNA chaperone *(RZ1) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.35G013300.1 GR-RBP3, Ceric.35G013300 RNA editing factor *(ORRM3) & original description:... 0.04 OrthoFinder output from all 47 species
Cre02.g079400 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g00165 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06304 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03121 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g16014 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os04g33810.1 LOC_Os04g33810 Small RNA-binding protein 11, chloroplastic... 0.02 OrthoFinder output from all 47 species
Len_g03058 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g06168 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g11735 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g22331 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g12851 CCR2, ATGRP7,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g12890 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g18229 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g32203 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00490 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g10436 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23738 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g24962 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g06085 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12344 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14490 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g17461 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19209 CCR1, GR-RBP8,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g32569 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05591 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17262 GR-RBP4, GRP4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17920 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g52954 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57632 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008093 ATRZ-1A RNA chaperone *(RZ1) & original description: CDS=129-794 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009193 No alias not classified & original description: CDS=133-507 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014217 CCR2, ATGRP7,... not classified & original description: CDS=284-862 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0220.g026168 GR-RBP3 RNA editing factor *(ORRM3) & original description: CDS=1-420 0.04 OrthoFinder output from all 47 species
Sam_g09617 No alias RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14736 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g25482 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g26696 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38661 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc02g088790.3.1 GR-RBP3, Solyc02g088790 RNA editing factor (ORRM) 0.03 OrthoFinder output from all 47 species
Spa_g10567 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g16011 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g20439 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22222 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04956 No alias RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10113 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22300 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g30660 GR-RBP3 RNA ediTing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003316_P001 CCR2, ATGRP7,... RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from all 47 species
Zm00001e011440_P001 Zm00001e011440 RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from all 47 species
Zm00001e012299_P004 CCR2, ATGRP7,... RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
Zm00001e028502_P003 Zm00001e028502 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 39 108
No external refs found!