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  5. Cba_g06504

Cba_g06504


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g06504

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.03 OrthoFinder output from all 47 species
AT3G47530 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G13270 RARE1 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003810 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059864 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g104165 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g113053 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g116035 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10002 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04451 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14142 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54909 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07336 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g09035 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40871 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g42783 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11539 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g27555 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67429.t1 Aspi01Gene67429 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72589.t1 MEF22, Aspi01Gene72589 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012398 No alias not classified & original description: CDS=1-3681 0.02 OrthoFinder output from all 47 species
Azfi_s0015.g013865 No alias not classified & original description: CDS=1-1626 0.03 OrthoFinder output from all 47 species
Azfi_s0034.g025187 OTP84 not classified & original description: CDS=1-2199 0.03 OrthoFinder output from all 47 species
Azfi_s0118.g046610 OTP86 not classified & original description: CDS=1-2490 0.02 OrthoFinder output from all 47 species
Azfi_s0277.g061496 No alias not classified & original description: CDS=1-2121 0.02 OrthoFinder output from all 47 species
Azfi_s0345.g065835 No alias not classified & original description: CDS=1-1926 0.02 OrthoFinder output from all 47 species
Azfi_s0999.g094975 No alias not classified & original description: CDS=29-2698 0.02 OrthoFinder output from all 47 species
Dac_g18584 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_36839 OTP84 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
LOC_Os01g15530.1 LOC_Os01g15530 Pentatricopeptide repeat-containing protein At5g56310... 0.02 OrthoFinder output from all 47 species
LOC_Os03g56400.1 LOC_Os03g56400 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
LOC_Os07g39910.1 LOC_Os07g39910 Pentatricopeptide repeat-containing protein At1g25360... 0.03 OrthoFinder output from all 47 species
LOC_Os10g30760.1 LOC_Os10g30760 Pentatricopeptide repeat-containing protein At3g24000,... 0.02 OrthoFinder output from all 47 species
Lfl_g06850 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g25543 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g05303 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23513 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01995 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g38691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57716 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07515 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13846 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001529 SLO1 not classified & original description: CDS=1-1572 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006956 No alias not classified & original description: CDS=1-2820 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014697 OTP86 not classified & original description: CDS=1-2199 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0087.g018468 No alias solute transporter *(MTCC) & original description: CDS=2675-4273 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018966 No alias not classified & original description: CDS=1-2631 0.03 OrthoFinder output from all 47 species
Sam_g17711 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g24503 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24509 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g34092 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo84339 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Spa_g15017 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e011748_P001 LPA66, Zm00001e011748 Pentatricopeptide repeat-containing protein At4g21065... 0.02 OrthoFinder output from all 47 species
Zm00001e032581_P001 Zm00001e032581 RNA editing factor (BLX) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 374 421
IPR002885 Pentatricopeptide_repeat 577 624
IPR002885 Pentatricopeptide_repeat 172 219
IPR002885 Pentatricopeptide_repeat 273 321
IPR002885 Pentatricopeptide_repeat 349 372
IPR002885 Pentatricopeptide_repeat 478 508
IPR002885 Pentatricopeptide_repeat 450 475
IPR002885 Pentatricopeptide_repeat 652 675
No external refs found!