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  5. Cba_g07128

Cba_g07128


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g07128
Cluster HCCA: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00042600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.05 OrthoFinder output from all 47 species
Adi_g005487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g013556 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g035543 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036520 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g067784 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g21708 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g49175 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g11550 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g05682 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11003 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16640 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g16781 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g24623 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28688 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33058 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17383.t1 OTP84, Aspi01Gene17383 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05966 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20249 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g68955 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.25G002100.1 Ceric.25G002100 not classified & original description: pacid=50593112... 0.04 OrthoFinder output from all 47 species
Ceric.29G081200.1 OTP86, Ceric.29G081200 not classified & original description: pacid=50624479... 0.05 OrthoFinder output from all 47 species
Dac_g35515 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08608 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g12787 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g37078 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g37654 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g50014 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22114 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g31029 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17702 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40138 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g04292 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17699 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g19707 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g22913 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g23052 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28804 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34234 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41084 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g47291 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06317 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10123 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g16697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g43985 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13595 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09076 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g18166 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g18475 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g32992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51324 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13479 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g43984 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e039026_P001 OTP82, Zm00001e039026 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 14 62
IPR002885 Pentatricopeptide_repeat 92 109
No external refs found!