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  5. Cba_g07246

Cba_g07246 (ATRPS13A, RPS13, PFL2, RPS13A)


Aliases : ATRPS13A, RPS13, PFL2, RPS13A

Description : component *(uS15) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001931 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001931_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g07246
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00029190 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AT3G60770 No alias Ribosomal protein S13/S15 0.03 OrthoFinder output from all 47 species
Adi_g074584 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Als_g05939 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g41112 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0288.g063234 No alias component *(uS15) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.24G030900.1 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Cre07.g331900 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Dac_g04888 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g10636 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01018537001 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
GSVIVT01027637001 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Gb_18181 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.05 OrthoFinder output from all 47 species
Gb_34582 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os07g38540.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os08g02400.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os08g02410.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.06 OrthoFinder output from all 47 species
MA_141232g0010 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp4g03410.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.04 OrthoFinder output from all 47 species
Nbi_g15982 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pp3c16_15220V3.1 ATRPS13A, RPS13,... ribosomal protein S13A 0.02 OrthoFinder output from all 47 species
Sam_g13246 No alias component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g20369 No alias component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g37409 No alias component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Smo440805 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Solyc01g091220.3.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc05g051000.3.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc10g018250.2.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc11g072260.2.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
Spa_g03180 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Spa_g56598 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Zm00001e021837_P003 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.04 OrthoFinder output from all 47 species
Zm00001e021839_P001 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.04 OrthoFinder output from all 47 species
Zm00001e029210_P002 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004334 fumarylacetoacetase activity IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
MF GO:0016822 hydrolase activity, acting on acid carbon-carbon bonds IEP HCCA
MF GO:0016823 hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
InterPro domains Description Start Stop
IPR012606 Ribosomal_S13/S15_N 1 60
IPR000589 Ribosomal_S15 83 146
No external refs found!