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  5. Lfl_g31478

Lfl_g31478 (ATARFA1F, ARFA1F)


Aliases : ATARFA1F, ARFA1F

Description : ARF-GTPase *(ARF1) & original description: none


Gene families : OG0000301 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g31478

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00096p00110370 ATARFA1B, ARFA1B Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder output from all 47 species
AMTR_s00204p00014880 ATARFA1F,... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder output from all 47 species
AT1G70490 ARFA1D, ATARFA1D Ras-related small GTP-binding family protein 0.02 OrthoFinder output from all 47 species
AT2G15310 ATARFB1A, ARFB1A ADP-ribosylation factor B1A 0.03 OrthoFinder output from all 47 species
AT2G47170 ARF1A1C Ras-related small GTP-binding family protein 0.05 OrthoFinder output from all 47 species
Adi_g009716 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g024167 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g110620 ATARFA1F, ARFA1F not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g112037 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11192 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31131 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g07699 ATARFB1B, ARFB1B ARF-GTPase *(ARFA) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g38491 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g19871 ATARFB1B, ARFB1B ARF-GTPase *(ARFA) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02408 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07482 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19389 ATARFB1B, ARFB1B ARF-GTPase *(ARFA) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68966 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70444.t1 ATARFA1F,... ARF-GTPase *(ARF1) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g31560 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g49446 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g68389 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.09G076800.1 ATARFA1B,... ARF-GTPase *(ARF1) & original description:... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021127.129 ARFA1E, ATARFA1E Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder output from all 47 species
Cre12.g486250 ARFA1E, ATARFA1E Vesicle trafficking.Coat protein I (COPI) coatomer... 0.01 OrthoFinder output from all 47 species
Dac_g27561 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g36401 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g40902 ATARFA1F, ARFA1F not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09806 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g30050 No alias ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g51949 ATARFB1B, ARFB1B ARF-GTPase *(ARFA) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017654001 ATARFA1F, ARFA1F Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder output from all 47 species
GSVIVT01024420001 ATARFB1C, ARFB1C Vesicle trafficking.Coat protein I (COPI) coatomer... 0.01 OrthoFinder output from all 47 species
LOC_Os02g47110.2 ATARFB1B,... ARF-GTPase 0.01 OrthoFinder output from all 47 species
LOC_Os03g59740.1 ATARFA1B,... ARF-GTPase 0.02 OrthoFinder output from all 47 species
LOC_Os05g41060.1 ATARFA1F,... ARF-GTPase 0.02 OrthoFinder output from all 47 species
Len_g05534 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04441 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g28928 ATARFB1B, ARFB1B ARF-GTPase *(ARFA) & original description: none 0.04 OrthoFinder output from all 47 species
MA_101085g0010 ARFA1E, ATARFA1E ARF-GTPase 0.03 OrthoFinder output from all 47 species
MA_12637g0010 ATARFA1B, ARFA1B ARF-GTPase 0.03 OrthoFinder output from all 47 species
MA_4349g0020 ATARFA1F, ARFA1F ARF-GTPase 0.03 OrthoFinder output from all 47 species
Mp2g14560.1 ATARFA1F, ARFA1F ARF-GTPase 0.01 OrthoFinder output from all 47 species
Mp3g13920.1 ATARFA1F, ARFA1F ARF-GTPase 0.03 OrthoFinder output from all 47 species
Mp7g13050.1 ATARFA1F, ARFA1F ARF-GTPase 0.02 OrthoFinder output from all 47 species
Msp_g25108 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15523 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15667 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06306 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g07772 ATARFB1B, ARFB1B ARF-GTPase *(ARFA) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02984 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c12_14940V3.1 ARFA1E,... ADP-ribosylation factor A1E 0.01 OrthoFinder output from all 47 species
Ppi_g25799 ATARFA1F, ARFA1F not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000285 ATARFB1B, ARFB1B ARF-GTPase *(ARFA) & original description: CDS=1-882 0.03 OrthoFinder output from all 47 species
Smo232066 ATARFA1B, ARFA1B Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder output from all 47 species
Solyc01g008000.3.1 ATARFA1B,... ARF-GTPase 0.02 OrthoFinder output from all 47 species
Solyc02g092970.3.1 ATARF1, ARF1,... ARF-GTPase 0.03 OrthoFinder output from all 47 species
Spa_g05142 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g11383 ATARFB1B, ARFB1B ARF-GTPase *(ARFA) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29324 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49717 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51715 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54649 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05371 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g05379 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e033127_P003 ARF1A1C, Zm00001e033127 ARF-GTPase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0007021 tubulin complex assembly IEP HCCA
BP GO:0007023 post-chaperonin tubulin folding pathway IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0048487 beta-tubulin binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006689 Small_GTPase_ARF/SAR 1 160
No external refs found!