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  5. Cba_g09606

Cba_g09606 (AtRABA1f, RABA1f)


Aliases : AtRABA1f, RABA1f

Description : A-class RAB GTPase & original description: none


Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g09606

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00189630 AtRABA1f,... Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
AT1G09630 ATRABA2A,... RAB GTPase 11C 0.03 OrthoFinder output from all 47 species
AT2G43130 ATRABA5C, ARA4,... P-loop containing nucleoside triphosphate hydrolases... 0.02 OrthoFinder output from all 47 species
Adi_g078039 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04605 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07128 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14023 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30591 RABA2b,... A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09683 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g42193 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Cre03.g189250 ATRABA2A,... Vesicle trafficking.regulation of membrane tethering and... 0.01 OrthoFinder output from all 47 species
Ehy_g00786 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021253001 ATHSGBP, RABA1d,... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
LOC_Os03g60870.1 RABA2b,... A-class RAB GTPase 0.04 OrthoFinder output from all 47 species
LOC_Os05g01480.1 ATRABA2A,... A-class RAB GTPase 0.04 OrthoFinder output from all 47 species
LOC_Os05g44070.1 ATRABA1B, RAB11,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Len_g03672 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g27141 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
MpVg00760.1 AtRABA1f, RABA1f No annotation 0.03 OrthoFinder output from all 47 species
Ore_g15033 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g20309 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c2_10280V3.1 RABA2b,... RAB GTPase homolog A2B 0.02 OrthoFinder output from all 47 species
Ppi_g06237 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009470 ATRABA2A,... A-class RAB GTPase & original description: CDS=131-796 0.03 OrthoFinder output from all 47 species
Smo146310 AtRABA1f, RABA1f Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
Solyc02g072180.3.1 ATHSGBP, RABA1d,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Solyc10g045550.2.1 ATRABA2A,... A-class RAB GTPase 0.04 OrthoFinder output from all 47 species
Tin_g13810 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006210_P001 RABA2b,... A-class RAB GTPase 0.05 OrthoFinder output from all 47 species
Zm00001e031368_P002 RAB-A2C,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 14 174
No external refs found!