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  5. Cba_g10222

Cba_g10222 (ATCOL5, COL5)


Aliases : ATCOL5, COL5

Description : floral promoter *(CONSTANS) & original description: none


Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g10222
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01036037001 ATCOL4, COL4 RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
LOC_Os02g39710.1 ATCOL5, COL5,... transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
LOC_Os06g44450.1 ATCOL5, COL5,... Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os08g15050.1 ATCOL5, COL5,... no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp8g13470.1 ATCOL4, COL4 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Nbi_g01889 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09426 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g34586 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14700 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g22028 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g22158 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10567 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005340 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: CDS=210-1442 0.05 OrthoFinder output from all 47 species
Solyc02g089500.4.1 COL1, ATCOL1,... transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Solyc02g089520.2.1 COL2, ATCOL2,... transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Zm00001e039922_P001 COL3, ATCOL3,... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 45 90
IPR000315 Znf_B-box 4 45
IPR010402 CCT_domain 273 315
No external refs found!