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  5. Cba_g11364

Cba_g11364


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g11364

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00110050 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00046p00214930 CRR22,... Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
AT5G04780 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g003333 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g003860 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004333 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g009247 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g096783 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13795 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42949 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13499 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g17191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23769 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03223 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04451 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05087 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05685 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05758 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07226 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g07793 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19184 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26694 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59722 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g62803 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16170 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14400.t1 CRR2, Aspi01Gene14400 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0171.g055669 No alias not classified & original description: CDS=1-2286 0.03 OrthoFinder output from all 47 species
Cba_g03910 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06936 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20681 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67898 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75354 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G081900.1 Ceric.07G081900 not classified & original description: pacid=50627936... 0.03 OrthoFinder output from all 47 species
Ceric.1Z242100.1 CRR22, Ceric.1Z242100 not classified & original description: pacid=50573437... 0.03 OrthoFinder output from all 47 species
Ceric.24G028500.1 Ceric.24G028500 not classified & original description: pacid=50629587... 0.03 OrthoFinder output from all 47 species
Ceric.26G013000.1 Ceric.26G013000 not classified & original description: pacid=50600010... 0.03 OrthoFinder output from all 47 species
Dac_g03846 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g05153 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g05682 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g07635 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g08335 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09065 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g14137 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16347 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18577 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18584 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g19077 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g21320 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23801 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g25885 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30279 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31017 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31776 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35959 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g36655 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g42858 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g42987 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g44415 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02848 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06364 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g09000 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11021 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19353 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28641 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009574001 OSB1 Cell cycle.organelle machineries.DNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01010898001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.03 OrthoFinder output from all 47 species
GSVIVT01029885001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
GSVIVT01036975001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
LOC_Os01g60430.1 LOC_Os01g60430 RNA editing factor (MEF10) 0.03 OrthoFinder output from all 47 species
LOC_Os03g56400.1 LOC_Os03g56400 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
LOC_Os04g09530.1 LOC_Os04g09530 RNA editing factor (BLX) 0.02 OrthoFinder output from all 47 species
LOC_Os04g35650.1 LOC_Os04g35650 Pentatricopeptide repeat-containing protein At3g26540... 0.03 OrthoFinder output from all 47 species
LOC_Os04g41120.1 LOC_Os04g41120 Pentatricopeptide repeat-containing protein At4g38010... 0.02 OrthoFinder output from all 47 species
LOC_Os07g47370.1 LOC_Os07g47370 Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species
LOC_Os08g25280.1 LOC_Os08g25280 Pentatricopeptide repeat-containing protein At4g39530... 0.02 OrthoFinder output from all 47 species
LOC_Os08g39130.1 LOC_Os08g39130 Pentatricopeptide repeat-containing protein At2g29760,... 0.03 OrthoFinder output from all 47 species
LOC_Os10g34720.1 LOI1, MEF11,... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os12g30620.1 LOC_Os12g30620 Pentatricopeptide repeat-containing protein At3g29230... 0.02 OrthoFinder output from all 47 species
Len_g04337 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12704 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18263 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18308 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g20619 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g37832 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05649 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05665 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06003 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06715 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07683 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g22363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33282 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33317 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g33322 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_127785g0010 REME1 Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
MA_3612g0010 CRR22 Pentatricopeptide repeat-containing protein At5g16860... 0.03 OrthoFinder output from all 47 species
MA_474261g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
MA_482767g0010 OTP84 Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
MA_615077g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Msp_g03860 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14157 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g23967 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35105 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g04936 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06302 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15832 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g16697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24679 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g24894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g32582 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01374 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03103 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03104 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14457 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g32595 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g42576 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57076 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57545 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63614 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06094 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g25475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c17_4890V3.1 Pp3c17_4890 mitochondrial editing factor 22 0.01 OrthoFinder output from all 47 species
Ppi_g11526 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29583 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g40150 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g54414 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g60521 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g03385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g06304 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26414 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36579 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g38015 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g47343 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g48011 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g50005 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo399 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 OrthoFinder output from all 47 species
Solyc01g108180.4.1 Solyc01g108180 RNA editing factor (MEF8). RNA editing factor (BLX) 0.02 OrthoFinder output from all 47 species
Solyc06g066080.1.1 OTP85, Solyc06g066080 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Spa_g08133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g11567 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17205 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g26788 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55587 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g02869 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06620 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17410 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24321 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g28890 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g38826 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001007_P001 Zm00001e001007 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e001038_P001 CRR2, Zm00001e001038 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
Zm00001e019482_P001 Zm00001e019482 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species
Zm00001e031660_P001 Zm00001e031660 Pentatricopeptide repeat-containing protein At4g14170... 0.03 OrthoFinder output from all 47 species
Zm00001e040920_P001 Zm00001e040920 Pentatricopeptide repeat-containing protein At3g26540... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 151 180
IPR002885 Pentatricopeptide_repeat 184 230
IPR002885 Pentatricopeptide_repeat 284 332
IPR002885 Pentatricopeptide_repeat 689 736
IPR002885 Pentatricopeptide_repeat 385 433
IPR002885 Pentatricopeptide_repeat 486 534
IPR002885 Pentatricopeptide_repeat 663 688
IPR002885 Pentatricopeptide_repeat 764 788
IPR002885 Pentatricopeptide_repeat 592 620
No external refs found!