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  5. Cba_g11546

Cba_g11546


Description : pectin methylesterase & original description: none


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g11546
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00247950 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.05 OrthoFinder output from all 47 species
AMTR_s00140p00036490 evm_27.TU.AmTr_v1... Probable pectinesterase 8 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G05310 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT2G36710 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G07410 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G07420 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G47500 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g046688 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g127146 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g16363 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17009 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18114 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g19093 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g20368 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20723 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g41068 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16581 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25187 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g25188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31556 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05464 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07065 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12101 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Als_g12395 No alias pectin methylesterase & original description: none 0.1 OrthoFinder output from all 47 species
Aob_g04970 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06410 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g02507 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11491 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20602 No alias pectin methylesterase & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g58922 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g69965 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene07316.t2 VGDH1, Aspi01Gene07316 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene16842.t2 Aspi01Gene16842 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene20189.t1 Aspi01Gene20189 pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0004.g008437 No alias pectin methylesterase & original description: CDS=79-1257 0.04 OrthoFinder output from all 47 species
Azfi_s0033.g024992 No alias pectin methylesterase & original description: CDS=226-1431 0.03 OrthoFinder output from all 47 species
Azfi_s0103.g044651 No alias pectin methylesterase & original description: CDS=1-1083 0.03 OrthoFinder output from all 47 species
Cba_g03729 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.03G008900.1 Ceric.03G008900 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.03G061600.1 Ceric.03G061600 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.10G071400.1 Ceric.10G071400 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.10G076400.1 Ceric.10G076400 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.11G006300.1 Ceric.11G006300 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.11G006400.1 Ceric.11G006400 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.11G006500.1 Ceric.11G006500 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.11G007100.1 Ceric.11G007100 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.11G007600.1 Ceric.11G007600 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.11G007800.1 Ceric.11G007800 not classified & original description: pacid=50595757... 0.02 OrthoFinder output from all 47 species
Ceric.11G007900.1 Ceric.11G007900 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.13G037000.1 Ceric.13G037000 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.13G037800.1 Ceric.13G037800 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.13G038200.1 Ceric.13G038200 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.14G017300.1 Ceric.14G017300 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.1Z171200.1 Ceric.1Z171200 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.1Z228300.1 Ceric.1Z228300 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G056100.1 VGDH1, Ceric.21G056100 not classified & original description: pacid=50603924... 0.03 OrthoFinder output from all 47 species
Ceric.29G054600.1 Ceric.29G054600 pectin methylesterase & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.35G046900.1 Ceric.35G046900 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.39G035900.1 Ceric.39G035900 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g00830 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g05020 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09998 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g11820 No alias EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Dac_g20667 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23541 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06266 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g11350 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g11729 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g15370 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g28954 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g42904 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g51244 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g13696 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g25225 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29430 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g38152 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46321 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g47291 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g48343 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g06587 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g08073 QRT1 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09632 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12472 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14386 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18839 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g19236 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26229 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01015852001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01023786001 ATPE11, PE11 Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
Gb_01459 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Gb_01460 No alias pectin methylesterase 0.04 OrthoFinder output from all 47 species
Gb_17798 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Gb_27225 No alias pectin methylesterase 0.04 OrthoFinder output from all 47 species
LOC_Os05g44600.1 LOC_Os05g44600 pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os09g39760.1 LOC_Os09g39760 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Len_g07516 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Len_g07605 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g15122 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g09832 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15828 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g19805 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37206 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40175 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
MA_10267810g0010 No alias pectin methylesterase 0.04 OrthoFinder output from all 47 species
MA_14449g0010 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_16389g0020 No alias pectin methylesterase 0.04 OrthoFinder output from all 47 species
MA_19196g0010 ATPE11, PE11 pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_20853g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_62865g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_66089g0010 No alias pectin methylesterase 0.04 OrthoFinder output from all 47 species
MA_99816g0010 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp2g01420.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp2g19430.1 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
Mp3g01170.1 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Mp5g03920.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp5g03930.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Msp_g04640 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g08120 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44845 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00669 No alias pectin methylesterase & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g03614 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g08076 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g13329 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g27443 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06428 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26065 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g27386 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29702 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30829 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01612 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02205 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10691 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g62948 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11138 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18465 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g24799 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g25901 No alias pectin methylesterase & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g29894 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g31507 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g47255 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59766 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g61465 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g63851 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000266 No alias pectin methylesterase & original description: CDS=1-1272 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004950 No alias pectin methylesterase & original description: CDS=716-1846 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010091 No alias pectin methylesterase & original description: CDS=1-882 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010557 No alias pectin methylesterase & original description: CDS=267-1394 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015086 No alias pectin methylesterase & original description: CDS=460-1611 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020122 No alias not classified & original description: CDS=269-877 0.02 OrthoFinder output from all 47 species
Sam_g11685 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Smo165098 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
Spa_g07165 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g11007 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g29457 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47305 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49578 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49902 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54581 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01655 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15602 No alias pecTin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g19866 No alias pecTin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20547 No alias pecTin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g36990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g36991 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g43829 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007306_P001 Zm00001e007306 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Zm00001e027944_P002 ATPE11, PE11,... pectin methylesterase 0.03 OrthoFinder output from all 47 species
Zm00001e033546_P001 Zm00001e033546 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Zm00001e035522_P001 QRT1, Zm00001e035522 pectin methylesterase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0008184 glycogen phosphorylase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 73 358
No external refs found!