Cba_g12256

Description : helicase UAP56 & original description: none

Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g12256

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00036p00225190	evm_27.TU.AmTr_v1...	RNA processing.messenger ribonucleoprotein particle...	0.02	OrthoFinder output from all 47 species
Als_g32429	No alias	helicase UAP56 & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s2721.g112781	No alias	helicase UAP56 & original description: CDS=1-1683	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001376.20	No alias	RNA processing.messenger ribonucleoprotein particle...	0.02	OrthoFinder output from all 47 species
Dac_g21343	No alias	helicase UAP56 & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g11077	No alias	helicase UAP56 & original description: none	0.03	OrthoFinder output from all 47 species
Gb_14863	No alias	RNA helicase (Sub2). helicase component UAP56 of...	0.04	OrthoFinder output from all 47 species
MA_99733g0010	No alias	RNA helicase (Sub2). helicase component UAP56 of...	0.03	OrthoFinder output from all 47 species
Mp1g02350.1	No alias	RNA helicase (Sub2). helicase component UAP56 of...	0.02	OrthoFinder output from all 47 species
Pir_g07151	No alias	helicase UAP56 & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0078.g017678	No alias	helicase UAP56 & original description: CDS=11-1291	0.02	OrthoFinder output from all 47 species
Sam_g40258	No alias	helicase UAP56 & original description: none	0.02	OrthoFinder output from all 47 species
Solyc08g061000.4.1	Solyc08g061000	RNA helicase (Sub2). helicase component UAP56 of...	0.02	OrthoFinder output from all 47 species
Spa_g50791	No alias	helicase UAP56 & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g14284	No alias	helicase UAP56 & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	193	300
IPR011545	DEAD/DEAH_box_helicase_dom	2	153

External Links

No external refs found!

Cba_g12256

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation