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  5. Cba_g13584

Cba_g13584 (SPO11-2)


Aliases : SPO11-2

Description : component a *(SPO11) of meiotic topoisomerase-VI complex & original description: none


Gene families : OG0001338 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001338_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g13584
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00230220 BIN5, RHL2,... DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os12g42760.1 LOC_Os12g42760 Meiotic recombination protein SPO11-4 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Solyc07g065430.2.1 ATSPO11-1, Solyc07g065430 Meiotic recombination protein SPO11-1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g42313 ATSPO11-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0006259 DNA metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR013049 Spo11/TopoVI_A_N 92 157
No external refs found!