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  5. Cba_g13700

Cba_g13700


Description : chromatin remodeling factor *(ALC1) & original description: none


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g13700

Target Alias Description ECC score Gene Family Method Actions
AT5G19310 No alias Homeotic gene regulator 0.03 OrthoFinder output from all 47 species
Adi_g011986 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Adi_g061147 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Als_g59637 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.06 OrthoFinder output from all 47 species
Aob_g29989 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Aop_g20304 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g02108 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g02115 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Ceric.06G004000.1 Ceric.06G004000 chromatin remodeling factor *(ALC1) & original... 0.03 OrthoFinder output from all 47 species
Ceric.06G006600.1 ATCHR12, Ceric.06G006600 SMARCA component *(SYD/BRM/MINU) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.21G081900.1 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000545.10 ATCHR12 Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g10723 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Dac_g21252 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Ehy_g10042 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01012117001 PKR1, CHR4 RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
GSVIVT01018218001 No alias Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Msp_g14786 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g12189 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Ore_g23580 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g07018 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Ppi_g13843 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002414 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008525 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008742 No alias not classified & original description: CDS=1-2037 0.03 OrthoFinder output from all 47 species
Sam_g29292 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Sam_g50500 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.05 OrthoFinder output from all 47 species
Sam_g52523 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc06g065730.3.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 61 348
IPR001650 Helicase_C 372 494
No external refs found!