Aliases : XRN3, AtXRN3
Description : exoribonuclease *(RAT1/XRN2) & original description: none
Gene families : OG0000769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000769_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00025p00024460 | XRN3, AtXRN3,... | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00491p00000370 | XRN3, AtXRN3,... | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| AT1G54490 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease 4 | 0.02 | OrthoFinder output from all 47 species | |
| AT5G42540 | XRN2, AtXRN2 | exoribonuclease 2 | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g17886 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g15103 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g21055 | XRN3, AtXRN3 | exoribonuclease *(XRN4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g06747 | XRN3, AtXRN3 | exoribonuclease *(XRN4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g11344 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g68931 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene51564.t1 | EIN5, AIN1,... | exoribonuclease *(XRN4) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0241.g059771 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: CDS=1-2460 | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.08G059400.1 | EIN5, AIN1,... | exoribonuclease *(XRN4) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.30G049400.1 | XRN3, AtXRN3,... | exoribonuclease *(RAT1/XRN2) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Cre16.g679900 | XRN3, AtXRN3 | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g42552 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g07777 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g05069 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g58060.1 | EIN5, AIN1,... | EBF-modulating exoribonuclease (EIN5/XRN4).... | 0.06 | OrthoFinder output from all 47 species | |
| Len_g17366 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g06753 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g19229 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| MA_10016710g0020 | EIN5, AIN1, XRN4, ATXRN4 | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
| Mp3g08820.1 | XRN3, AtXRN3 | exoribonuclease (RAT1/XRN2) | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g13176 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g14685 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g19695 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g19704 | EIN5, AIN1, XRN4, ATXRN4 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g19708 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g12064 | No alias | exoribonuclease *(RAT1/XRN2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g38845 | No alias | exoribonuclease *(XRN4) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Solyc04g049010.3.1 | EIN5, AIN1,... | EBF-modulating exoribonuclease (EIN5/XRN4).... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc04g081280.3.1 | XRN3, AtXRN3,... | exoribonuclease (RAT1/XRN2) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc12g089280.2.1 | XRN3, AtXRN3,... | exoribonuclease (RAT1/XRN2) | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g46210 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e011879_P001 | EIN5, AIN1,... | EBF-modulating exoribonuclease (EIN5/XRN4).... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005216 | monoatomic ion channel activity | IEP | HCCA |
| MF | GO:0005244 | voltage-gated monoatomic ion channel activity | IEP | HCCA |
| MF | GO:0005247 | voltage-gated chloride channel activity | IEP | HCCA |
| MF | GO:0005253 | monoatomic anion channel activity | IEP | HCCA |
| MF | GO:0005254 | chloride channel activity | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006820 | monoatomic anion transport | IEP | HCCA |
| BP | GO:0006821 | chloride transport | IEP | HCCA |
| BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
| BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| MF | GO:0008308 | voltage-gated monoatomic anion channel activity | IEP | HCCA |
| MF | GO:0008509 | monoatomic anion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015103 | inorganic anion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015108 | chloride transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015267 | channel activity | IEP | HCCA |
| BP | GO:0015698 | inorganic anion transport | IEP | HCCA |
| BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
| MF | GO:0016791 | phosphatase activity | IEP | HCCA |
| MF | GO:0022803 | passive transmembrane transporter activity | IEP | HCCA |
| MF | GO:0022832 | voltage-gated channel activity | IEP | HCCA |
| MF | GO:0022836 | gated channel activity | IEP | HCCA |
| MF | GO:0022839 | monoatomic ion gated channel activity | IEP | HCCA |
| CC | GO:0030117 | membrane coat | IEP | HCCA |
| CC | GO:0030120 | vesicle coat | IEP | HCCA |
| CC | GO:0030127 | COPII vesicle coat | IEP | HCCA |
| MF | GO:0042578 | phosphoric ester hydrolase activity | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
| No external refs found! |
