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  5. Lfl_g32302

Lfl_g32302


Description : not classified & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g32302
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00227790 NFD2, HMG BETA... HMG1/2-like protein OS=Vicia faba 0.02 OrthoFinder output from all 47 species
Als_g61427 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g30507 HMGB5, NFD5, NFD05, HMGD not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0132.g049182 NFD2, HMG BETA... not classified & original description: CDS=249-659 0.04 OrthoFinder output from all 47 species
Azfi_s0242.g059828 NFD03, HMGB3, NFD3 not classified & original description: CDS=1-552 0.04 OrthoFinder output from all 47 species
Cba_g71618 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre16.g672300 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g31445 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g43104 NFD2, HMG BETA... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_05796 NFD2, HMG BETA... High mobility group B protein 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Ppi_g27714 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014473 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Sam_g02757 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g09873 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g49491 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g50491 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo73858 No alias High mobility group B protein 6 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Tin_g36451 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e020222_P001 Zm00001e020222 High mobility group B protein 14 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 97 166
IPR009071 HMG_box_dom 7 78
No external refs found!