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  5. Cba_g16817

Cba_g16817 (RAP2.4)


Aliases : RAP2.4

Description : subgroup ERF-I transcription factor & original description: none


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g16817
Cluster HCCA: Cluster_282

Target Alias Description ECC score Gene Family Method Actions
AT1G43160 RAP2.6 related to AP2 6 0.02 OrthoFinder output from all 47 species
AT1G44830 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G61630 CRF6 cytokinin response factor 6 0.03 OrthoFinder output from all 47 species
AT4G13620 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G27950 CRF4 cytokinin response factor 4 0.03 OrthoFinder output from all 47 species
Aev_g10949 ERF110 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g12610 DEAR1, CEJ1, ATERF#011 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.03 OrthoFinder output from all 47 species
Aev_g19208 DEAR1, CEJ1, ATERF#011 subgroup ERF-II transcription factor *(ERF19/20) &... 0.03 OrthoFinder output from all 47 species
Aev_g28707 ORA47 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g33038 DEAR1, CEJ1, ATERF#011 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g44036 TINY2 subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aev_g49009 ORA47 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05905 No alias subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Als_g21941 RAP2.1 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.02 OrthoFinder output from all 47 species
Als_g49053 RAP2.2 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Als_g51447 ATERF-9, ERF9, ATERF9 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Als_g54778 DEAR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g29381 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aop_g38999 ORA47 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70736 DREB26 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34453.t1 Aspi01Gene34453 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G053400.1 ERF7, ATERF7,... not classified & original description: pacid=50585332... 0.03 OrthoFinder output from all 47 species
Ceric.02G053500.1 ATERF3, ERF3,... subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.04G096400.1 ERF-1, ATERF-1,... subgroup ERF-IX transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ceric.05G034500.1 DEAR2, Ceric.05G034500 not classified & original description: pacid=50578330... 0.03 OrthoFinder output from all 47 species
Ceric.07G001200.1 Ceric.07G001200 not classified & original description: pacid=50626761... 0.03 OrthoFinder output from all 47 species
Ceric.20G036000.1 ATERF8, ATERF-8,... subgroup ERF-VIII transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dac_g23015 ERF38, ATERF38 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g22214 tny subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
LOC_Os03g08490.1 RAP2.12, LOC_Os03g08490 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os06g03670.1 DREB1A, ATCBF3,... transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
LOC_Os07g22770.1 ERF1, ATERF1,... no description available(sp|a0a3q7i5y9|erfc3_sollc : 90.1) 0.02 OrthoFinder output from all 47 species
MA_16778g0010 DREB2A, DREB2 transcription factor (DREB) 0.04 OrthoFinder output from all 47 species
MA_484878g0010 No alias transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Mp7g09350.1 ERF-1, ATERF-1 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Msp_g14138 ERF-1, ATERF-1 subgroup ERF-IX transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g37745 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g02862 ERF-1, ATERF-1 subgroup ERF-IX transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g04870 No alias subgroup ERF-I transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g03958 TINY2 subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pir_g15653 DEAR4, RAP2.10 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.03 OrthoFinder output from all 47 species
Pnu_g16792 RAP2.12 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Ppi_g02117 HRE1 subgroup ERF-VI transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g11929 DEAR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13453 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15852 No alias subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.02 OrthoFinder output from all 47 species
Ppi_g41606 ERF-1, ATERF-1 subgroup ERF-IX transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55442 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Smo38500 DREB2A, DREB2 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
Solyc01g090300.2.1 ATERF13, ERF13,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Solyc03g093550.1.1 Solyc03g093550 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Solyc06g051840.1.1 CRF4, Solyc06g051840 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Solyc09g089930.3.1 ERF1, ATERF1,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Spa_g17335 ATERF-9, ERF9, ATERF9 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Spa_g21487 RAP2.6 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g24188 ERF-1, ATERF-1 subgroup ERF-IX transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015429_P001 Zm00001e015429 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Zm00001e023224_P001 Zm00001e023224 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Zm00001e024669_P001 ERF110, Zm00001e024669 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Zm00001e027350_P001 ATERF12, ERF12,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Zm00001e033537_P001 ERF1, ATERF1,... transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Zm00001e035811_P001 PUCHI, Zm00001e035811 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Zm00001e041539_P001 ERF-1, ATERF-1,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 314 362
No external refs found!