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  5. Cba_g17081

Cba_g17081 (AMSH1)


Aliases : AMSH1

Description : deubiquitinase *(AMSH) & original description: none


Gene families : OG0001591 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001591_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g17081

Target Alias Description ECC score Gene Family Method Actions
AT4G16144 AMSH3 associated molecule with the SH3 domain of STAM 3 0.03 OrthoFinder output from all 47 species
GSVIVT01008310001 AMSH1 Vesicle trafficking.endomembrane trafficking.protein... 0.02 OrthoFinder output from all 47 species
Pp3c6_16700V3.1 AMSH1, Pp3c6_16700 associated molecule with the SH3 domain of STAM 1 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022666 AMSH1 deubiquitinase *(AMSH) & original description: CDS=122-1471 0.02 OrthoFinder output from all 47 species
Sam_g21741 No alias deubiquitinase *(AMSH) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e026261_P001 AMSH1, Zm00001e026261 deubiquitinase (AMSH) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008233 peptidase activity IEA Interproscan
MF GO:0008237 metallopeptidase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR015063 USP8_dimer 17 105
IPR000555 JAMM/MPN+_dom 326 431
No external refs found!