1. Home
  2. Species
  3. Cibotium barometz
  4. Sequence
  5. Cba_g17337

Cba_g17337


Description : not classified & original description: none


Gene families : OG0002687 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002687_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g17337

Target Alias Description ECC score Gene Family Method Actions
AT1G75560 No alias zinc knuckle (CCHC-type) family protein 0.02 OrthoFinder output from all 47 species
Adi_g088448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g114920 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03541 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g22161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g00814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35381 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01808 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g46327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 161 175
IPR001878 Znf_CCHC 81 97
IPR001878 Znf_CCHC 104 115
IPR001878 Znf_CCHC 63 77
IPR001878 Znf_CCHC 123 139
IPR001878 Znf_CCHC 142 158
IPR001878 Znf_CCHC 43 59
IPR001878 Znf_CCHC 215 230
No external refs found!