Cba_g18797


Description : not classified & original description: none


Gene families : OG0000359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000359_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g18797

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00100040 evm_27.TU.AmTr_v1... 4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
AT1G20490 No alias AMP-dependent synthetase and ligase family protein 0.03 OrthoFinder output from all 47 species
Aob_g22282 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene45695.t2 OPCL1, Aspi01Gene45695 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g25397 OPCL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g30890 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G029500.1 OPCL1, Ceric.18G029500 not classified & original description: pacid=50621164... 0.02 OrthoFinder output from all 47 species
Ceric.25G005800.1 OPCL1, Ceric.25G005800 not classified & original description: pacid=50594129... 0.02 OrthoFinder output from all 47 species
Ceric.36G025100.1 OPCL1, Ceric.36G025100 not classified & original description: pacid=50568001... 0.03 OrthoFinder output from all 47 species
Dac_g22397 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g28355 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10363 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g04748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g67530.1 LOC_Os01g67530 4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
LOC_Os03g04000.1 OPCL1, LOC_Os03g04000 OPC-8:CoA synthetase 0.03 OrthoFinder output from all 47 species
LOC_Os07g17970.1 LOC_Os07g17970 4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Len_g14710 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g23512 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10922g0010 OPCL1 OPC-8:CoA synthetase 0.03 OrthoFinder output from all 47 species
Mp1g04990.1 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Msp_g09388 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g00701 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g37295 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g65418 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo123905 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Smo177466 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Spa_g01541 OPCL1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g02284 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g30048 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26630 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g46255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004865_P001 Zm00001e004865 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR025110 AMP-bd_C 451 526
IPR000873 AMP-dep_Synth/Lig_com 42 442
No external refs found!