Cba_g19568


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g19568
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AT1G05750 PDE247, CLB19 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G48910 LPA66 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g002823 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g004274 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005447 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005700 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g005725 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g005790 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g015234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018748 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g020425 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g022140 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033460 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g058773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069059 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g075693 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g076358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087421 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g096196 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099266 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099342 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g32785 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g17503 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g39532 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04477 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05696 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07100 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18767 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18769 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18804 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19303 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20750 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27208 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30906 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g33141 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g33170 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g33528 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g38696 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54931 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55326 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g57869 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g61444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27006 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28235 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28240 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g29474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g32957 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04619 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09002 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16738 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g19862 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23983 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33557 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56965.t1 Aspi01Gene56965 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene70790.t1 Aspi01Gene70790 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007651 No alias not classified & original description: CDS=1-3018 0.06 OrthoFinder output from all 47 species
Azfi_s0068.g036353 No alias not classified & original description: CDS=1-2463 0.02 OrthoFinder output from all 47 species
Azfi_s0101.g044355 No alias not classified & original description: CDS=1-2031 0.03 OrthoFinder output from all 47 species
Azfi_s0130.g049076 No alias not classified & original description: CDS=1-1890 0.03 OrthoFinder output from all 47 species
Azfi_s0140.g051267 OTP84 not classified & original description: CDS=59-2905 0.02 OrthoFinder output from all 47 species
Azfi_s0154.g053544 No alias ssDNA-binding protein *(OSB) & original description: CDS=137-355 0.05 OrthoFinder output from all 47 species
Azfi_s0245.g060017 No alias not classified & original description: CDS=1-2076 0.05 OrthoFinder output from all 47 species
Azfi_s0693.g082556 No alias not classified & original description: CDS=1-2178 0.03 OrthoFinder output from all 47 species
Cba_g05443 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19901 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19910 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34719 OTP86 ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g67474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g72718 MEF21 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G028200.1 OTP84, Ceric.02G028200 not classified & original description: pacid=50583866... 0.04 OrthoFinder output from all 47 species
Ceric.10G062000.1 Ceric.10G062000 ssDNA-binding protein *(OSB) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.28G001700.1 Ceric.28G001700 not classified & original description: pacid=50570577... 0.05 OrthoFinder output from all 47 species
Ceric.39G022100.1 Ceric.39G022100 not classified & original description: pacid=50582510... 0.05 OrthoFinder output from all 47 species
Cre01.g025950 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.01 OrthoFinder output from all 47 species
Dac_g03359 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g05750 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07560 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g08183 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g15084 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18563 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g33204 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g40749 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g50838 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22016 OTP86 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g31028 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000719001 OSB1 Cell cycle.organelle machineries.DNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01012201001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.04 OrthoFinder output from all 47 species
GSVIVT01014727001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
GSVIVT01015468001 No alias Pentatricopeptide repeat-containing protein At1g31430... 0.03 OrthoFinder output from all 47 species
GSVIVT01017378001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
GSVIVT01032721001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.05 OrthoFinder output from all 47 species
GSVIVT01035618001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
GSVIVT01036207001 OTP82 Pentatricopeptide repeat-containing protein At5g66520... 0.05 OrthoFinder output from all 47 species
GSVIVT01036943001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species
GSVIVT01037332001 CRR22 Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
Gb_10113 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.04 OrthoFinder output from all 47 species
Gb_20571 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
LOC_Os03g38580.1 EMB2261, LOC_Os03g38580 Pentatricopeptide repeat-containing protein At3g24000,... 0.05 OrthoFinder output from all 47 species
LOC_Os08g38610.1 LOC_Os08g38610 Pentatricopeptide repeat-containing protein At1g26900,... 0.03 OrthoFinder output from all 47 species
Len_g03881 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05143 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17998 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18801 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g33724 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g07120 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07135 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g13001 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14573 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14702 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_3502g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Msp_g09805 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g17741 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g26428 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28762 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g33982 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g20126 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27428 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38400 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38630 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g10372 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g15248 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02766 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g03104 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07329 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g32558 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57077 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57368 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g59292 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000499 CRR22 EC_2.4 glycosyltransferase & original description: CDS=1-2862 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007167 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-3162 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014697 OTP86 not classified & original description: CDS=1-2199 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g016059 No alias not classified & original description: CDS=25-3486 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017091 No alias not classified & original description: CDS=1-3111 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017928 No alias not classified & original description: CDS=112-2919 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018665 No alias not classified & original description: CDS=8-2563 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018966 No alias not classified & original description: CDS=1-2631 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0140.g022672 No alias not classified & original description: CDS=1-3558 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0143.g022909 No alias not classified & original description: CDS=1-2484 0.02 OrthoFinder output from all 47 species
Sam_g02113 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18597 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52122 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo181046 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Solyc01g095690.2.1 Solyc01g095690 Pentatricopeptide repeat-containing protein At4g01030,... 0.03 OrthoFinder output from all 47 species
Solyc03g098420.3.1 Solyc03g098420 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc04g016540.2.1 Solyc04g016540 Pentatricopeptide repeat-containing protein At2g39620... 0.05 OrthoFinder output from all 47 species
Spa_g00965 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g14318 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23688 MEF19 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26279 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g29657 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g51293 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05979 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08462 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g21292 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g23441 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e000301_P001 Zm00001e000301 Pentatricopeptide repeat-containing protein At4g35130,... 0.04 OrthoFinder output from all 47 species
Zm00001e002552_P001 Zm00001e002552 RNA editing factor (SEL1/PDM1) 0.02 OrthoFinder output from all 47 species
Zm00001e003605_P001 DOT4, Zm00001e003605 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
Zm00001e011467_P004 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.02 OrthoFinder output from all 47 species
Zm00001e014825_P001 Zm00001e014825 Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
Zm00001e016923_P001 CRR2, Zm00001e016923 Pentatricopeptide repeat-containing protein At3g46790,... 0.02 OrthoFinder output from all 47 species
Zm00001e020442_P001 Zm00001e020442 Pentatricopeptide repeat-containing protein At4g21300... 0.04 OrthoFinder output from all 47 species
Zm00001e024311_P001 Zm00001e024311 Pentatricopeptide repeat-containing protein At1g09410,... 0.03 OrthoFinder output from all 47 species
Zm00001e026664_P002 Zm00001e026664 RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species
Zm00001e031351_P001 EMB2261, Zm00001e031351 RNA editing factor (ECD1) 0.02 OrthoFinder output from all 47 species
Zm00001e041048_P001 OTP86, Zm00001e041048 RNA editing factor (OTP86) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 358 396
IPR002885 Pentatricopeptide_repeat 566 597
IPR002885 Pentatricopeptide_repeat 398 445
IPR002885 Pentatricopeptide_repeat 95 142
IPR002885 Pentatricopeptide_repeat 196 242
IPR002885 Pentatricopeptide_repeat 296 342
IPR002885 Pentatricopeptide_repeat 473 499
IPR002885 Pentatricopeptide_repeat 69 94
IPR002885 Pentatricopeptide_repeat 1 24
IPR002885 Pentatricopeptide_repeat 502 531
IPR002885 Pentatricopeptide_repeat 168 195
No external refs found!