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  5. Cba_g23108

Cba_g23108 (ATHMG, HMG, SSRP1, NFD)


Aliases : ATHMG, HMG, SSRP1, NFD

Description : not classified & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g23108
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
Als_g44161 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G004800.1 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Cre16.g672300 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g49727 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01032839001 No alias No description available 0.03 OrthoFinder output from all 47 species
Pir_g01461 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005885 ATHMG, HMG, SSRP1, NFD not classified & original description: CDS=348-2621 0.03 OrthoFinder output from all 47 species
Sam_g06141 No alias DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Spa_g53927 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e013329_P001 NFD2, HMG BETA... DNA-binding protein MNB1B OS=Zea mays... 0.02 OrthoFinder output from all 47 species
Zm00001e034918_P002 NFD2, HMG BETA... HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 112.0) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 89 157
No external refs found!