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  5. Cba_g23820

Cba_g23820 (SHP2, AGL5)


Aliases : SHP2, AGL5

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g23820
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00267050 AGL6,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AT1G22130 AGL104 AGAMOUS-like 104 0.03 OrthoFinder output from all 47 species
AT1G77950 AGL67 AGAMOUS-like 67 0.02 OrthoFinder output from all 47 species
AT1G77980 AGL66 AGAMOUS-like 66 0.02 OrthoFinder output from all 47 species
Adi_g021209 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g072612 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g123786 AGL21 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06477 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g51470 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g15745 AGL21 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0038.g026346 SHP2, AGL5 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.04G082300.1 AGL28, Ceric.04G082300 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.08G048300.1 AGL42, Ceric.08G048300 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.08G048600.1 AGL10, CAL1,... not classified & original description: pacid=50638045... 0.03 OrthoFinder output from all 47 species
Ehy_g05429 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01001437001 AGL15 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
Gb_19178 AGL6 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os02g52340.1 SVP, AGL22,... transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
LOC_Os03g54160.1 AGL7, AP1, LOC_Os03g54160 transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
LOC_Os04g38780.1 AGL16, LOC_Os04g38780 MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.01 OrthoFinder output from all 47 species
LOC_Os06g11970.1 AGL66, LOC_Os06g11970 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Len_g27742 AGL6 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12263 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g40583 AGL6 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_18048g0010 AGL21 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_206542g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_412147g0010 SOC1, AGL20, ATSOC1 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_75656g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_899014g0010 SVP, AGL22 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Nbi_g10109 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g21190 AGL8, FUL MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g09166 AGL21 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13602 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g22352 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g22364 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g17601 AGL21 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g41504 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002217 AGL15 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011014 AGL9, SEP3 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Solyc01g093960.3.1 AGL6, Solyc01g093960 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc05g012020.4.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Spa_g14680 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027031_P001 PI, Zm00001e027031 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e030839_P001 AGL66, Zm00001e030839 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
MF GO:0015267 channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR002487 TF_Kbox 127 213
IPR002100 TF_MADSbox 54 101
No external refs found!