Cba_g24091


Description : not classified & original description: none


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g24091

Target Alias Description ECC score Gene Family Method Actions
Aob_g11608 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0237.g059557 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Ceric.34G065000.1 Ceric.34G065000 not classified & original description: pacid=50623415... 0.03 OrthoFinder output from all 47 species
LOC_Os08g24760.1 ESP3, EMB2733,... RNA helicase (Prp2) 0.02 OrthoFinder output from all 47 species
Msp_g32552 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3s62_110V3.1 Pp3s62_110 RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009152 No alias not classified & original description: CDS=1-849 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009162 No alias not classified & original description: CDS=1-849 0.03 OrthoFinder output from all 47 species
Smo429199 No alias Solute transport.carrier-mediated transport.MFS... 0.04 OrthoFinder output from all 47 species
Smo76120 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 402 468
IPR001650 Helicase_C 210 337
IPR011709 DEAD-box_helicase_OB_fold 558 634
IPR003593 AAA+_ATPase 23 159
No external refs found!