Cba_g24352 (RAP2.2)

Aliases : RAP2.2

Description : transcription factor component *(HRE/RAP2.12) of oxygen-sensor activity & original description: none

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g24352
Cluster	HCCA: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00184450	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
AT1G12610	DDF1	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
AT1G49120	No alias	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
AT3G23240	ERF1, ATERF1	ethylene response factor 1	0.03	OrthoFinder output from all 47 species
Adi_g001518	ATERF12, ERF12	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g013119	ATERF12, ERF12	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.20G036000.1	ATERF8, ATERF-8,...	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dde_g02021	RAP2.2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g08064	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g17593	CRF3	subgroup ERF-VI transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01021098001	ATERF4, RAP2.5,...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
GSVIVT01028050001	HRE2	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
LOC_Os02g42585.1	LOC_Os02g42585	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
LOC_Os06g03670.1	DREB1A, ATCBF3,...	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
LOC_Os06g47590.1	ATERF3, ERF3,...	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os08g31580.1	RAP2.4, LOC_Os08g31580	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
LOC_Os09g20350.1	RAP2.4, LOC_Os09g20350	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
Len_g13558	DEAR3	subgroup ERF-II transcription factor *(ERF16/17/18) &...	0.02	OrthoFinder output from all 47 species
Len_g15213	WIN1, SHN1	subgroup ERF-V transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_113446g0010	ORA47	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
MA_436575g0010	TINY2	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_84578g0010	HRE1	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Ore_g20460	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g29062	ATERF-9, ERF9, ATERF9	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ore_g29063	ATERF11, ERF11	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ore_g44015	ATERF-9, ERF9, ATERF9	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ore_g44016	ATERF3, ERF3	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Pir_g18798	TINY2	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pir_g28144	DDF1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g07532	CRF3	subgroup ERF-VI transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc03g093540.1.1	Solyc03g093540	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Solyc09g075420.3.1	HRE2, Solyc09g075420	transcription factor (ERF)	0.04	OrthoFinder output from all 47 species
Zm00001e010860_P001	HRE2, Zm00001e010860	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Zm00001e017516_P001	HRE2, Zm00001e017516	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Zm00001e026192_P001	HRE2, Zm00001e026192	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Zm00001e035837_P001	ERF72, EBP,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
CC	GO:0009360	DNA polymerase III complex	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0030976	thiamine pyrophosphate binding	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
CC	GO:0042575	DNA polymerase complex	IEP	HCCA
MF	GO:0050997	quaternary ammonium group binding	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	153	201

External Links

No external refs found!

Cba_g24352 (RAP2.2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation