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  5. Cba_g24520

Cba_g24520 (SPL3)


Aliases : SPL3

Description : SBP-type transcription factor & original description: none


Gene families : OG0000121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g24520
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00150040 SPL13, SPL13A,... RNA biosynthesis.transcriptional activation.SBP... 0.02 OrthoFinder output from all 47 species
Adi_g015714 SPL2 SBP-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g021708 SPL2 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g01541 SPL7, ATSPL7 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06348 SPL2 SBP-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g08975 SPL8 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24833.t1 SPL2, Aspi01Gene24833 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0048.g030445 SPL2 SBP-type transcription factor & original description: CDS=29-1837 0.03 OrthoFinder output from all 47 species
Cre07.g335150 SPL3 RNA biosynthesis.transcriptional activation.SBP... 0.01 OrthoFinder output from all 47 species
Cre09.g399289 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 OrthoFinder output from all 47 species
Ehy_g19323 SPL3 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23300 SPL12 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25935 SPL10 SBP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g33046 SPL2 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48834 No alias SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e025234_P001 SPL2, Zm00001e025234 transcription factor (SBP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR004333 SBP_dom 127 200
IPR004333 SBP_dom 352 425
No external refs found!