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  5. Cba_g24660

Cba_g24660


Description : regulatory factor *(TZF) of mRNA stress granule formation & original description: none


Gene families : OG0000156 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000156_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g24660

Target Alias Description ECC score Gene Family Method Actions
AT5G58620 No alias zinc finger (CCCH-type) family protein 0.03 OrthoFinder output from all 47 species
Aev_g06728 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Als_g10851 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Aop_g08255 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Aop_g14316 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Aop_g32930 No alias regulatory factor *(TZF) of mRNA stress granule... 0.05 OrthoFinder output from all 47 species
Aspi01Gene09556.t1 ATTZF1, ATCTH,... regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Aspi01Gene14509.t1 ATTZF1, ATCTH,... regulatory factor *(TZF) of mRNA stress granule... 0.01 OrthoFinder output from all 47 species
Aspi01Gene68944.t1 Aspi01Gene68944 regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Cba_g11861 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ceric.02G081600.1 Ceric.02G081600 regulatory factor *(TZF) of mRNA stress granule... 0.01 OrthoFinder output from all 47 species
Ceric.23G017000.1 Ceric.23G017000 regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Dac_g02872 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Dac_g15516 No alias regulatory factor *(TZF) of mRNA stress granule... 0.01 OrthoFinder output from all 47 species
Dcu_g21348 No alias regulatory factor *(TZF) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
LOC_Os07g47240.1 PEI1, LOC_Os07g47240 mRNA-binding regulatory factor (TZF) 0.01 OrthoFinder output from all 47 species
Mp6g00540.1 No alias mRNA-binding regulatory factor (TZF) 0.01 OrthoFinder output from all 47 species
Msp_g13456 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Msp_g20345 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Pnu_g20981 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Pnu_g30312 No alias regulatory factor *(TZF) of mRNA stress granule... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005148 No alias regulatory factor *(TZF) of mRNA stress granule... 0.01 OrthoFinder output from all 47 species
Solyc03g063680.3.1 Solyc03g063680 mRNA-binding regulatory factor (TZF) 0.02 OrthoFinder output from all 47 species
Spa_g31285 No alias regulatory factor *(TZF) of mRNA stress granule... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006810 transport IEP HCCA
BP GO:0006835 dicarboxylic acid transport IEP HCCA
BP GO:0015711 organic anion transport IEP HCCA
BP GO:0015740 C4-dicarboxylate transport IEP HCCA
BP GO:0015743 malate transport IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
BP GO:0046942 carboxylic acid transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
InterPro domains Description Start Stop
IPR002110 Ankyrin_rpt 59 162
IPR041367 Znf-CCCH_4 347 367
No external refs found!