Cba_g25034 (VAC1, ECB2, ATECB2)


Aliases : VAC1, ECB2, ATECB2

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g25034

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00127120 CRR22,... Pentatricopeptide repeat-containing protein At3g09040,... 0.02 OrthoFinder output from all 47 species
AT1G25360 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G46790 CRR2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g002450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g002816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g003859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005657 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g007371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034179 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g068858 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069220 MEF19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g096184 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099132 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16530 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21860 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36200 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11263 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18130 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19058 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32003 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g42153 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0034.g025187 OTP84 not classified & original description: CDS=1-2199 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036347 CRR22 not classified & original description: CDS=1-879 0.03 OrthoFinder output from all 47 species
Azfi_s0210.g058082 No alias not classified & original description: CDS=1-2637 0.03 OrthoFinder output from all 47 species
Azfi_s0303.g063761 No alias not classified & original description: CDS=81-2876 0.03 OrthoFinder output from all 47 species
Azfi_s0380.g067373 No alias not classified & original description: CDS=1-3669 0.03 OrthoFinder output from all 47 species
Cba_g04039 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20154 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g24308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g26542 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29022 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g31997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g73650 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G036800.1 Ceric.04G036800 not classified & original description: pacid=50632550... 0.03 OrthoFinder output from all 47 species
Ceric.18G049100.1 Ceric.18G049100 not classified & original description: pacid=50621467... 0.02 OrthoFinder output from all 47 species
Ceric.23G059700.1 CRR22, Ceric.23G059700 not classified & original description: pacid=50609689... 0.02 OrthoFinder output from all 47 species
Ceric.25G042100.1 Ceric.25G042100 not classified & original description: pacid=50593153... 0.03 OrthoFinder output from all 47 species
Dac_g45717 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g04093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g49048 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g50128 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03276 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g09279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18876 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23070 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g40999 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04742 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g04980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14572 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32911 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37539 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_7907g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
MA_8319g0010 CRR2 Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
Msp_g03174 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g03574 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g06422 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g07853 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14067 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g16105 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28798 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g33836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34529 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g42903 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g45771 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g48277 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06261 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g36314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g45445 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03091 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04317 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12988 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13456 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13480 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g16345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g43031 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g46816 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57550 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g60756 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63828 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19854 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g23429 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05910 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05927 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g12807 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g35259 RARE1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g45723 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g53362 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g60900 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015411 No alias not classified & original description: CDS=1-3726 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0198.g025550 No alias not classified & original description: CDS=1-2784 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0226.g026331 No alias not classified & original description: CDS=1-2598 0.03 OrthoFinder output from all 47 species
Sam_g10509 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g114660.1.1 Solyc03g114660 Pentatricopeptide repeat-containing protein At1g18485... 0.02 OrthoFinder output from all 47 species
Spa_g06014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53142 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26897 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g30419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g34880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44081 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44203 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 451 499
IPR002885 Pentatricopeptide_repeat 352 398
IPR002885 Pentatricopeptide_repeat 150 196
IPR002885 Pentatricopeptide_repeat 251 297
IPR002885 Pentatricopeptide_repeat 553 600
IPR002885 Pentatricopeptide_repeat 225 249
No external refs found!