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  5. Cba_g25122

Cba_g25122 (SHP2, AGL5)


Aliases : SHP2, AGL5

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g25122

Target Alias Description ECC score Gene Family Method Actions
AT2G45660 SOC1, AGL20, ATSOC1 AGAMOUS-like 20 0.04 OrthoFinder output from all 47 species
AT4G37940 AGL21 AGAMOUS-like 21 0.03 OrthoFinder output from all 47 species
Als_g28471 SHP2, AGL5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g47147 AGL42 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g59584 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g02975 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene49767.t1 STK, AGL11,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene72145.t1 AGL30, Aspi01Gene72145 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0016.g014286 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g29967 AGL16 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.12G051800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Ceric.23G035100.1 AGL18, Ceric.23G035100 MADS/AGL-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Dcu_g32867 AGL13 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50123 AGL3, SEP4 not classified & original description: none 0.07 OrthoFinder output from all 47 species
LOC_Os02g45770.1 AGL6, LOC_Os02g45770 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Len_g09144 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g48682 AGL6 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g16699 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Mp4g11760.1 AGL7, AP1 transcription factor (MADS/AGL) 0.06 OrthoFinder output from all 47 species
Msp_g06052 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g20675 AGL16 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g38153 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09699 GL19, AGL19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19814 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g29613 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g33044 AGL42 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006239 SHP2, AGL5 not classified & original description: CDS=497-1018 0.02 OrthoFinder output from all 47 species
Smo437868 AGL29 RNA biosynthesis.transcriptional activation.MADS box... 0.06 OrthoFinder output from all 47 species
Solyc05g012020.4.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc06g069430.3.1 AGL8, FUL, Solyc06g069430 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Tin_g20318 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e006950_P001 AGL32, TT16,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e033144_P001 AGL29, Zm00001e033144 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e036159_P001 AGL24, Zm00001e036159 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e039774_P001 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 79 127
No external refs found!