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  5. Cba_g25400

Cba_g25400 (CLPR1, SVR2, NCLPP5)


Aliases : CLPR1, SVR2, NCLPP5

Description : non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex & original description: none


Gene families : OG0000988 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000988_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g25400
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00194810 CLPR4,... Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder output from all 47 species
AMTR_s00164p00068000 CLPR1, SVR2,... Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder output from all 47 species
AT1G09130 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.03 OrthoFinder output from all 47 species
AT4G17040 CLPR4 CLP protease R subunit 4 0.04 OrthoFinder output from all 47 species
Adi_g019566 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Adi_g087162 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.02 OrthoFinder output from all 47 species
Aev_g07767 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Als_g33229 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.07 OrthoFinder output from all 47 species
Aob_g02995 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Cre03.g204350 CLPR4 Protein degradation.peptidase families.serine-type... 0.03 OrthoFinder output from all 47 species
Cre07.g331500 No alias Protein degradation.peptidase families.serine-type... 0.03 OrthoFinder output from all 47 species
Cre14.g619100 CLPR1, SVR2, NCLPP5 Protein degradation.peptidase families.serine-type... 0.05 OrthoFinder output from all 47 species
Dac_g03150 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Dac_g10911 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Dcu_g11508 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Ehy_g18668 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
GSVIVT01037850001 CLPR1, SVR2, NCLPP5 Protein degradation.peptidase families.serine-type... 0.05 OrthoFinder output from all 47 species
LOC_Os05g51450.1 CLPR1, SVR2,... non-proteolytic core component ClpR of chloroplast... 0.02 OrthoFinder output from all 47 species
Lfl_g01084 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
MA_6114g0010 No alias ATP-dependent Clp protease proteolytic subunit-related... 0.08 OrthoFinder output from all 47 species
MA_8898851g0010 CLPR1, SVR2, NCLPP5 non-proteolytic core component ClpR of chloroplast... 0.02 OrthoFinder output from all 47 species
Mp6g21300.1 No alias non-proteolytic core component ClpR of chloroplast... 0.02 OrthoFinder output from all 47 species
Nbi_g05257 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Nbi_g11210 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Ore_g07323 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.02 OrthoFinder output from all 47 species
Ppi_g13921 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Sam_g11367 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.06 OrthoFinder output from all 47 species
Sam_g16208 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Sam_g17176 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.08 OrthoFinder output from all 47 species
Sam_g52083 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Smo116719 CLPR4 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder output from all 47 species
Solyc01g099690.3.1 Solyc01g099690 non-proteolytic core component ClpR of chloroplast... 0.04 OrthoFinder output from all 47 species
Solyc08g077890.3.1 CLPR4, Solyc08g077890 non-proteolytic core component ClpR of chloroplast... 0.04 OrthoFinder output from all 47 species
Solyc10g049710.2.1 CLPR1, SVR2,... non-proteolytic core component ClpR of chloroplast... 0.04 OrthoFinder output from all 47 species
Spa_g55823 CLPR4 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR023562 ClpP/TepA 206 387
No external refs found!