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  5. Cba_g26011

Cba_g26011


Description : component *(uS6c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0003772 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003772_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g26011
Cluster HCCA: Cluster_288

Target Alias Description ECC score Gene Family Method Actions
AT1G64510 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.06 OrthoFinder output from all 47 species
Aev_g04389 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ala_g02976 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Als_g05365 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Als_g19098 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aob_g08781 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Aop_g30964 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031290 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Ceric.10G083400.1 Ceric.10G083400 component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.32G022300.1 Ceric.32G022300 component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Cre12.g520600 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Dac_g02644 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Dcu_g40728 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Dde_g06910 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ehy_g04427 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01019593001 No alias Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
Gb_07403 No alias component psRPS6 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
LOC_Os03g62630.1 LOC_Os03g62630 component psRPS6 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Len_g38836 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Lfl_g06876 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Mp4g07210.1 No alias component psRPS6 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Msp_g00928 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Nbi_g25871 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ore_g08524 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ore_g16705 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pir_g00320 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Pnu_g10315 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ppi_g06171 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009778 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Sam_g19470 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Smo58368 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Solyc08g082690.2.1 Solyc08g082690 component psRPS6 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Spa_g17715 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Spa_g37875 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Tin_g06363 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP HCCA
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP HCCA
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR000529 Ribosomal_S6 111 208
No external refs found!