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  5. Cba_g27482

Cba_g27482 (AGL104)


Aliases : AGL104

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g27482
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00270400 AGL32, TT16,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00010p00214260 AGL66,... RNA biosynthesis.transcriptional activation.MADS box... 0.01 OrthoFinder output from all 47 species
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT1G77980 AGL66 AGAMOUS-like 66 0.03 OrthoFinder output from all 47 species
AT2G45650 AGL6 AGAMOUS-like 6 0.02 OrthoFinder output from all 47 species
AT4G36590 No alias MADS-box transcription factor family protein 0.02 OrthoFinder output from all 47 species
Adi_g083241 AGL16 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g23467 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0034.g025354 AGL18 MADS/AGL-type transcription factor & original... 0.07 OrthoFinder output from all 47 species
Azfi_s0062.g035272 AGL16 MADS/AGL-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Cba_g38860 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000944.9 AGL15 RNA biosynthesis.transcriptional activation.MADS box... 0.01 OrthoFinder output from all 47 species
Ehy_g07325 AGL8, FUL not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01027577001 AGL6 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01033067001 AGL7, AP1 RNA biosynthesis.transcriptional activation.MADS box... 0.06 OrthoFinder output from all 47 species
GSVIVT01036549001 AGL7, AP1 RNA biosynthesis.transcriptional activation.MADS box... 0.05 OrthoFinder output from all 47 species
Gb_15398 PI transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os05g11414.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os09g32948.1 AGL9, SEP3,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os10g39130.1 GL19, AGL19,... transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
MA_34737g0010 AGL17 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Pir_g21582 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.14 OrthoFinder output from all 47 species
Solyc04g025050.1.1 AGL62, Solyc04g025050 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc10g044965.1.1 AGL21, Solyc10g044965 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
Tin_g27845 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e012024_P001 AGL4, SEP2,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e021053_P001 AGL30, Zm00001e021053 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 1 46
No external refs found!