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  5. Cba_g30890

Cba_g30890 (OPCL1)


Aliases : OPCL1

Description : not classified & original description: none


Gene families : OG0000359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000359_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g30890

Target Alias Description ECC score Gene Family Method Actions
AT1G20510 OPCL1 OPC-8:0 CoA ligase1 0.03 OrthoFinder output from all 47 species
Adi_g020210 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g10320 ACOS5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g18797 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g20749 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g10363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g67530.1 LOC_Os01g67530 4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
LOC_Os07g17970.1 LOC_Os07g17970 4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
LOC_Os08g04770.1 LOC_Os08g04770 4-coumarate--CoA ligase-like 3 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Lfl_g15634 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_64763g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp1g04990.1 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Pnu_g17189 OPCL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo177466 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc11g069050.2.1 Solyc11g069050 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g01541 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g01564 OPCL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g12748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0008198 ferrous iron binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig_com 52 456
IPR025110 AMP-bd_C 465 540
No external refs found!