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  5. Cba_g33306

Cba_g33306 (ATSS4, SS4, SSIV)


Aliases : ATSS4, SS4, SSIV

Description : starch synthase *(SS4) & original description: none


Gene families : OG0000693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000693_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g33306
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00214840 ATSS4, SS4,... Probable starch synthase 4, chloroplastic/amyloplastic... 0.05 OrthoFinder output from all 47 species
AMTR_s00037p00164200 ATSS3, SS3,... Carbohydrate metabolism.starch... 0.03 OrthoFinder output from all 47 species
AT4G18240 ATSS4, SS4, SSIV starch synthase 4 0.07 OrthoFinder output from all 47 species
Aev_g25563 ATSS4, SS4, SSIV not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13690 ATSS3, SS3 starch synthase *(SS3) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05131 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g02255 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05284 ATSS3, SS3 starch synthase *(SS3) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene43820.t1 ATSS4, SS4,... starch synthase *(SS4) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000667 ATSS4, SS4, SSIV not classified & original description: CDS=177-2066 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007652 ATSS3, SS3 starch synthase *(SS3) & original description: CDS=201-2645 0.02 OrthoFinder output from all 47 species
Azfi_s0011.g012741 ATSS4, SS4, SSIV starch synthase *(SS5) & original description: CDS=57-2150 0.02 OrthoFinder output from all 47 species
Ceric.18G020900.1 ATSS3, SS3,... starch synthase *(SS3) & original description:... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020746.8 ATSS3, SS3 Probable starch synthase 4, chloroplastic/amyloplastic... 0.02 OrthoFinder output from all 47 species
Cre16.g665800 ATSS4, SS4, SSIV Probable starch synthase 4, chloroplastic/amyloplastic... 0.02 OrthoFinder output from all 47 species
Dac_g45424 ATSS3, SS3 starch synthase *(SS3) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01991 ATSS4, SS4, SSIV starch synthase *(SS5) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08981 ATSS3, SS3 starch synthase *(SS3) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11357 ATSS4, SS4, SSIV starch synthase *(SS5) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g14554 ATSS4, SS4, SSIV starch synthase *(SS5) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os04g53310.1 ATSS3, SS3,... starch synthase (SSIII) 0.04 OrthoFinder output from all 47 species
Len_g43983 ATSS3, SS3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g49747 ATSS4, SS4, SSIV starch synthase *(SS5) & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g14910.1 ATSS4, SS4, SSIV starch synthase (SSIV) 0.02 OrthoFinder output from all 47 species
Mp2g08030.1 ATSS4, SS4, SSIV Probable starch synthase 4, chloroplastic/amyloplastic... 0.03 OrthoFinder output from all 47 species
Msp_g26184 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g07616 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39876 ATSS4, SS4, SSIV starch synthase *(SS5) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0224.g026292 ATSS4, SS4, SSIV not classified & original description: CDS=1-2052 0.02 OrthoFinder output from all 47 species
Sam_g51044 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g071040.3.1 ATSS4, SS4,... starch synthase (SSIV) 0.02 OrthoFinder output from all 47 species
Tin_g26044 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e027473_P001 ATSS4, SS4,... starch synthase (SSIV) 0.02 OrthoFinder output from all 47 species
Zm00001e041682_P002 ATSS3, SS3,... starch synthase (SSIII) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016757 glycosyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR001296 Glyco_trans_1 849 1007
IPR013534 Starch_synth_cat_dom 553 792
No external refs found!