Cba_g35394

Description : component *(eS27) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001813 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001813_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g35394

Target	Alias	Description	ECC score	Gene Family Method
AT3G61110	ARS27A, RS27A	ribosomal protein S27	0.04	OrthoFinder output from all 47 species
Aop_g09346	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0182.g056413	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cre12.g529400	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Dac_g00043	No alias	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dac_g17983	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Dcu_g20815	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g35625	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g35656	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dde_g00057	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01001113001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01032964001	ARS27A, RS27A	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
LOC_Os04g27860.1	LOC_Os04g27860	component RPS27 of SSU proteome	0.03	OrthoFinder output from all 47 species
MA_54625g0010	ARS27A, RS27A	component RPS27 of SSU proteome	0.02	OrthoFinder output from all 47 species
Mp5g09510.1	No alias	component RPS27 of SSU proteome	0.03	OrthoFinder output from all 47 species
Pir_g63736	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pp3c1_15840V3.1	Pp3c1_15840	ribosomal protein S27	0.03	OrthoFinder output from all 47 species
Pp3c22_18310V3.1	ARS27A, RS27A,...	ribosomal protein S27	0.01	OrthoFinder output from all 47 species
Pp3c2_20540V3.1	ARS27A, RS27A,...	ribosomal protein S27	0.03	OrthoFinder output from all 47 species
Sam_g37791	No alias	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Solyc01g008080.3.1	ARS27A, RS27A,...	component RPS27 of SSU proteome	0.03	OrthoFinder output from all 47 species
Spa_g16488	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Spa_g55045	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Spa_g57360	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Tin_g24199	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000592	Ribosomal_S27	87	130

External Links

No external refs found!

Cba_g35394

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation