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  5. Cba_g36240

Cba_g36240


Description : not classified & original description: none


Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Cba_g36240

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00142490 UPF1, ATUPF1,... RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.04 OrthoFinder output from all 47 species
Adi_g036023 UPF1, ATUPF1, LBA1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g042703 UPF1, ATUPF1, LBA1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16050 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Ala_g27467 UPF1, ATUPF1, LBA1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g17076 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene01492.t1 UPF1, ATUPF1,... Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene28242.t1 UPF1, ATUPF1,... Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Dcu_g20574 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Ehy_g19605 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.02 OrthoFinder output from all 47 species
Ehy_g22041 UPF1, ATUPF1, LBA1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g20629 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Len_g20630 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.08 OrthoFinder output from all 47 species
Len_g21440 UPF1, ATUPF1, LBA1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04285 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Msp_g13210 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Nbi_g13849 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.06 OrthoFinder output from all 47 species
Pir_g66607 UPF1, ATUPF1, LBA1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g52670 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001267 MAA3 not classified & original description: CDS=1577-2170 0.04 OrthoFinder output from all 47 species
Sam_g10496 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g10497 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc08g077420.3.1 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.02 OrthoFinder output from all 47 species
Zm00001e010427_P002 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR041677 DNA2/NAM7_AAA_11 348 564
No external refs found!