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  5. Cba_g36996

Cba_g36996 (LOP1, TRN1)


Aliases : LOP1, TRN1

Description : not classified & original description: none


Gene families : OG0000350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000350_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g36996

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00138540 LOP1, TRN1,... Protein TORNADO 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Als_g14110 LOP1, TRN1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene68470.t1 LOP1, TRN1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G016400.1 Ceric.18G016400 not classified & original description: pacid=50620952... 0.04 OrthoFinder output from all 47 species
Ceric.20G043500.1 LOP1, TRN1,... not classified & original description: pacid=50566189... 0.02 OrthoFinder output from all 47 species
Dac_g14654 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19742 LOP1, TRN1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01037769001 LOP1, TRN1 Protein TORNADO 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
MA_94605g0010 LOP1, TRN1 Protein TORNADO 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g31881 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32964 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g39802 LOP1, TRN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g57097 LOP1, TRN1 not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
InterPro domains Description Start Stop
IPR032171 COR 302 442
No external refs found!