Cba_g37430 (COI1)


Aliases : COI1

Description : not classified & original description: none


Gene families : OG0000211 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000211_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g37430

Target Alias Description ECC score Gene Family Method Actions
AT5G49980 AFB5 auxin F-box protein 5 0.05 OrthoFinder output from all 47 species
Adi_g053952 AFB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05454 COI1 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
Aob_g24321 TIR1 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.02 OrthoFinder output from all 47 species
Ceric.05G036600.1 COI1, Ceric.05G036600 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
Ehy_g02869 COI1 component *(COI) of jasmonic acid receptor complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g07930 TIR1 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
GSVIVT01003183001 TIR1 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
LOC_Os05g37690.1 COI1, LOC_Os05g37690 component COI of jasmonic acid receptor complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041567 COI1_F-box 15 53
IPR041101 Transp_inhibit 74 119
No external refs found!