1. Home
  2. Species
  3. Cibotium barometz
  4. Sequence
  5. Cba_g38953

Cba_g38953 (CCR2, ATGRP7, GRP7, GR-RBP7)


Aliases : CCR2, ATGRP7, GRP7, GR-RBP7

Description : not classified & original description: none


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g38953

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00251200 evm_27.TU.AmTr_v1... Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00013p00256900 GRP2, ATGRP2,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AT5G04280 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.02 OrthoFinder output from all 47 species
Adi_g013124 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022151 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g040241 GR-RBP5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20823 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27510 CCR2, ATGRP7,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g32091 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29612 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51438.t1 GRP2, ATGRP2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031234 No alias not classified & original description: CDS=60-764 0.03 OrthoFinder output from all 47 species
Ceric.12G018200.1 Ceric.12G018200 RNA chaperone *(RZ1) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.32G066700.1 GRP2, ATGRP2,... not classified & original description: pacid=50597731... 0.02 OrthoFinder output from all 47 species
Cre09.g392350 GRP2, ATGRP2, GR-RBP2 Glycine-rich RNA-binding protein 2, mitochondrial... 0.01 OrthoFinder output from all 47 species
Cre17.g729150 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g03970 GR-RBP5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g24341 CCR2, ATGRP7,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06480 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g52563 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01001672001 ATRZ-1A Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01016195001 No alias Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_40269 No alias RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from all 47 species
LOC_Os07g08960.1 LOC_Os07g08960 RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from all 47 species
MA_133527g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g18229 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03416 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04318 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04562 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19209 CCR1, GR-RBP8,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g29739 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16425 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c12_1830V3.1 ATRZ-1A, Pp3c12_1830 RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.01 OrthoFinder output from all 47 species
Solyc01g104840.4.1 ATRZ-1A, Solyc01g104840 RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from all 47 species
Solyc02g066930.3.1 GR-RBP3, Solyc02g066930 RNA editing factor (ORRM) 0.02 OrthoFinder output from all 47 species
Solyc03g071560.4.1 Solyc03g071560 RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from all 47 species
Solyc10g081180.2.1 GR-RBP3, Solyc10g081180 RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.03 OrthoFinder output from all 47 species
Spa_g10567 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g12557 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g16011 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04956 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22300 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003316_P001 CCR2, ATGRP7,... RNA chaperone (RZ1|GR-RBP) 0.01 OrthoFinder output from all 47 species
Zm00001e005260_P002 Zm00001e005260 RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from all 47 species
Zm00001e018330_P004 GR-RBP3, Zm00001e018330 RNA editing factor (ORRM) 0.01 OrthoFinder output from all 47 species
Zm00001e033010_P001 Zm00001e033010 RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 10 78
No external refs found!