1. Home
  2. Species
  3. Cibotium barometz
  4. Sequence
  5. Cba_g39032

Cba_g39032 (ATHB13)


Aliases : ATHB13

Description : HD-ZIP I/II-type transcription factor & original description: none


Gene families : OG0000129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g39032

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00214750 HB6, ATHB6,... RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
Adi_g056046 ATHB13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07423 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g13478 ATHB5, ATHB-5, HB5 HD-ZIP I/II-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aob_g13559 ATHB13 HD-ZIP I/II-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aop_g05006 ATHB5, ATHB-5, HB5 HD-ZIP I/II-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0040.g026630 ATHB1, ATHB-1,... HD-ZIP I/II-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dde_g17794 ATHB5, ATHB-5, HB5 HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Gb_08575 ATHB13 transcription factor (HD-ZIP I/II) 0.03 OrthoFinder output from all 47 species
Len_g16712 ATHB5, ATHB-5, HB5 HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Lfl_g13122 ATHB5, ATHB-5, HB5 HD-ZIP I/II-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ore_g07340 HB6, ATHB6 HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g002010 ATHB5, ATHB-5, HB5 HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Zm00001e012829_P001 ATHB13, Zm00001e012829 transcription factor (HD-ZIP I/II) 0.02 OrthoFinder output from all 47 species
Zm00001e038901_P001 ATHB13, Zm00001e038901 transcription factor (HD-ZIP I/II) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 133 187
No external refs found!