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  5. Solyc11g032025.1.1

Solyc11g032025.1.1 (CRK8, Solyc11g032025)


Aliases : CRK8, Solyc11g032025

Description : Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana (sp|q94hw2|polr1_arath : 191.0)


Gene families : OG0007355 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007355_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g032025.1.1
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
Solyc03g044937.1.1 Solyc03g044937 Retrovirus-related Pol polyprotein from transposon RE1... 0.04 OrthoFinder output from all 47 species
Solyc03g078355.1.1 CRK8, Solyc03g078355 Retrovirus-related Pol polyprotein from transposon RE1... 0.04 OrthoFinder output from all 47 species
Solyc04g011915.1.1 CRK8, Solyc04g011915 Retrovirus-related Pol polyprotein from transposon RE1... 0.06 OrthoFinder output from all 47 species
Solyc08g065675.1.1 ORF111A, Solyc08g065675 Retrovirus-related Pol polyprotein from transposon RE1... 0.05 OrthoFinder output from all 47 species
Solyc09g014765.1.1 CRK8, Solyc09g014765 Retrovirus-related Pol polyprotein from transposon RE1... 0.05 OrthoFinder output from all 47 species
Solyc09g065525.1.1 ORF240B, Solyc09g065525 Retrovirus-related Pol polyprotein from transposon RE1... 0.1 OrthoFinder output from all 47 species
Solyc11g010245.1.1 CRK8, Solyc11g010245 Retrovirus-related Pol polyprotein from transposon RE1... 0.04 OrthoFinder output from all 47 species
Solyc12g019917.1.1 Solyc12g019917 Retrovirus-related Pol polyprotein from transposon RE1... 0.06 OrthoFinder output from all 47 species
Solyc12g044958.1.1 CRK8, Solyc12g044958 Retrovirus-related Pol polyprotein from transposon RE1... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR013103 RVT_2 2 70
No external refs found!